| Detailed Information for Phage Chelms |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Cassie Helmer |
| Year Found | 2016 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.4445 N, 79.9615 W Map |
| Discovery Notes | The soil sample was collected from the grass area outside Braierl Recreation Center in the Peterson Event Center. The coordinates for where the soil was collected are 40.4445 N and 79.9615 W. The sample was taken from the edge of where the grass was growing next to a large block of stone. The soil was dry and had roots running through it. It was taken from the top layer of dirt. The soil was collected at 3;30 PM. The temperature was 75ºF and it was in the bag for about a day before being added to phage buffer. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 15, 2016 |
| Sequencing Facility | University of Pittsburgh Genomics and Proteomics Core Laboratories |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 1063 |
| Genome length (bp) | 76261 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 191 bp |
| GC Content | 58.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CS |
| Subcluster | CS2 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Northwestern College |
| Annotation Status | In GenBank |
| Plaque Notes | Chelms produces small plaques. Some give a clear appearance and others give a haloed appearance. |
| Morphotype | Siphoviridae |
| Number of Genes | 104 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK801733 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| SEA Lysate Titer |
3x10^10 pfu/mL |
| Date of SEA Lysate Titering |
Oct 26, 2016 |
| Pitt Freezer Box# |
42 |
| Pitt Freezer Box Grid# |
C5 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
