Gordonia phage Tredge
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Detailed Information for Phage Tredge
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAaron Zheng
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.443884 N, 79.957642 W Map
Discovery NotesI found this sample from right behind Benedum off of Thackeray Ave at the coordinates N 40° 26' 37.9824" W 79° 57' 27.5112''. The weather was yet again very nice at around 50 degrees Farenheit. It had not rained at all on this day, and it had not snowed in a long time. The weather was still abnormally warm. This sample was also located in an area with a lot of dead grasses and some bushes. I hope this large amount of vegetation could show a higher chance of success on this sample.

This information is from Dylan Falk, the person I adopted the soil sample from.
Naming NotesOnline ID of one of my friends.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 17, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1255
Genome length (bp)75345
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1173 bp
GC Content59.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque Notes0.5mm to 1mm plaques that are small and circular. Plaques are clear all the way through
Has been Phamerated?Yes
Gene List

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Tredge_1

Tredge_2

Tredge_3

Tredge_4

Tredge_5

Tredge_6

Tredge_7

Tredge_8
(DNA primase)

Tredge_9

Tredge_10
(terminase)

Tredge_11
(portal protein)

Tredge_12

Tredge_13

Tredge_14
(capsid maturation protease)

Tredge_15
(capsid decoration protein)

Tredge_16
(major capsid protein)

Tredge_17

Tredge_18

Tredge_19
(head-to-tail adaptor)

Tredge_20

Tredge_21

Tredge_22

Tredge_23
(major tail protein)

Tredge_24
(tail assembly chaperone)

Tredge_25
(tail assembly chaperone)

Tredge_26
(tape measure protein)

Tredge_27
(minor tail protein)

Tredge_28
(minor tail protein)

Tredge_29
(minor tail protein)

Tredge_30

Tredge_31

Tredge_32

Tredge_33
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Tredge_34
(lysin A, protease M23 domain)

Tredge_35

Tredge_36

Tredge_37

Tredge_38

Tredge_39
(Cas4 family exonuclease)

Tredge_40
(WhiB family transcription factor)

Tredge_41

Tredge_42

Tredge_43
(DNA methylase)

Tredge_44

Tredge_45
(lysin B)

Tredge_46
(MazG-like nucleotide pyrophosphohydrolase)

Tredge_47

Tredge_48
(RusA-like resolvase)

Tredge_49

Tredge_50

Tredge_51
(DNA polymerase III sliding clamp)

Tredge_52

Tredge_53
(DNA polymerase III subunit)

Tredge_54
(helix-turn-helix DNA binding protein)

Tredge_55

Tredge_56

Tredge_57
(DNA helicase)

Tredge_58

Tredge_59

Tredge_60
(helix-turn-helix DNA binding protein)

Tredge_61

Tredge_62

Tredge_63

Tredge_64

Tredge_65

Tredge_66

Tredge_67

Tredge_68

Tredge_69

Tredge_70

Tredge_71

Tredge_72

Tredge_73

Tredge_74

Tredge_75

Tredge_76

Tredge_77
(HNH endonuclease)

Tredge_78

Tredge_79

Tredge_80

Tredge_81
(CobT-like cobalamin biosynthesis protein)

Tredge_82

Tredge_83

Tredge_84

Tredge_85
(AAA-ATPase)

Tredge_86

Tredge_87

Tredge_88

Tredge_89

Tredge_90

Tredge_91

Tredge_92

Tredge_93

Tredge_94

Tredge_95

Tredge_96

Tredge_97

Tredge_98

Tredge_99

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK494098
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 56
Pitt Freezer Box Grid# F6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload