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Gordonia phage Jormungandr
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Detailed Information for Phage Jormungandr
Discovery Information
Isolation HostGordonia terrae 3612
Found ByConnor Haszto
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates40.44 N, 79.95 W Map
Discovery NotesThe sample was collected on the Cathedral of Learning lawn. The surrounding area supported grass and plant growth but the sample was collected in a dry patch of dirt. The dirt was very dry and compact.

Naming NotesIn Norse mythology, Jörmungandr is a sea serpent, the middle child of the giantess Angrboða and Loki. The serpent grew so large that it was able to surround the earth and grasp its own tail. When it releases its tail, Ragnarök will begin.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 9, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage311
Genome length (bp)73380
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length184 bp
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque NotesThe plaques are very small but numerous.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Jormungandr_1

Jormungandr_2

Jormungandr_3

Jormungandr_4

Jormungandr_5
(DNA primase)

Jormungandr_6

Jormungandr_7
(terminase)

Jormungandr_8
(portal protein)

Jormungandr_9

Jormungandr_10

Jormungandr_11
(capsid maturation protease)

Jormungandr_12
(scaffolding protein)

Jormungandr_13
(major capsid protein)

Jormungandr_14

Jormungandr_15

Jormungandr_16

Jormungandr_17

Jormungandr_18

Jormungandr_19

Jormungandr_20
(major tail protein)

Jormungandr_22
(tail assembly chaperone)

Jormungandr_23
(tail assembly chaperone)

Jormungandr_24
(tapemeasure protein)

Jormungandr_25
(minor tail protein)

Jormungandr_26
(minor tail protein)

Jormungandr_27
(minor tail protein)

Jormungandr_28

Jormungandr_29

Jormungandr_30

Jormungandr_31

Jormungandr_32

Jormungandr_33

Jormungandr_34

Jormungandr_35
(lysin A, N-acetyl-beta-D-muramidase domain)

Jormungandr_36
(lysin A, peptidase domain)

Jormungandr_37

Jormungandr_38

Jormungandr_39

Jormungandr_40

Jormungandr_41
(exonuclease)

Jormungandr_42

Jormungandr_43

Jormungandr_44

Jormungandr_45

Jormungandr_46
(DNA methylase)

Jormungandr_47

Jormungandr_48

Jormungandr_49
(MazG-like pyrophosphohydrolase)

Jormungandr_50
(RusA-like resolvase)

Jormungandr_51

Jormungandr_52
(DNA polymerase III sliding clamp (beta))

Jormungandr_53

Jormungandr_54
(DnaQ-like exonuclease)

Jormungandr_55
(helix-turn-helix DNA-binding domain protein)

Jormungandr_56

Jormungandr_57
(DNA helicase)

Jormungandr_58

Jormungandr_59

Jormungandr_60

Jormungandr_61
(helix-turn-helix DNA-binding domain protein)

Jormungandr_62

Jormungandr_63

Jormungandr_64

Jormungandr_65

Jormungandr_66

Jormungandr_67

Jormungandr_68

Jormungandr_69

Jormungandr_70

Jormungandr_71

Jormungandr_72

Jormungandr_73

Jormungandr_74

Jormungandr_75

Jormungandr_76

Jormungandr_77

Jormungandr_78

Jormungandr_79

Jormungandr_80
(CobT-like cobalamin biosynthesis protein)

Jormungandr_81
(AAA-ATPase)

Jormungandr_82

Jormungandr_83

Jormungandr_84

Jormungandr_85

Jormungandr_86

Jormungandr_87

Jormungandr_88

Jormungandr_89

Jormungandr_90

Jormungandr_91

Jormungandr_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK494106
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# E8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload