Gordonia phage Diabla
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Detailed Information for Phage Diabla
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHailey Doherty
Year Found2019
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates40.4607 N, 79.9227 W Map
Discovery NotesThe area was dry and rocky with mulch around. There was limited vegetation surrounding, and the collection spot was right by a sidewalk in front of a Target.
Naming Notes"She devil." Enough said.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 5, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage837
Genome length (bp)77117
Character of genome endsDirect Terminal Repeat
GC Content59.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesSmaller plaques, more turbid in appearance, bullseye.
Has been Phamerated?Yes
Gene List

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(DNA binding protein)

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(DNA primase)

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(terminase, small subunit)

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(terminase, large subunit)

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(portal protein)

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(glycoside hydrolase)

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(capsid maturation protease)

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(scaffolding protein)

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(major capsid protein)

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(head-to-tail adaptor)

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(major tail protein)

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(tail assembly chaperone)

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(tail assembly chaperone)

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(tape measure protein)

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(minor tail protein)

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(minor tail protein)

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(minor tail protein)

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(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

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(lysin A, protease M23 domain)

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(Cas4 family exonuclease)

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(WhiB family transcription factor)

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(DNA methylase)

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(lysin B)

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(MazG-like nucleotide pyrophosphohydrolase)

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(RusA-like resolvase (endonuclease))

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(nucleoside deoxyribosyltransferase)

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(DNA polymerase III sliding clamp (Beta))

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(DnaQ-like (DNA polymerase III subunit))

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(helix-turn-helix DNA binding domain)

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(DNA helicase)

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(helix-turn-helix DNA binding domain)

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(HNH endonuclease)

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(AAA-ATPase)

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Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889379
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 114
Pitt Freezer Box Grid# B2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload