Gordonia phage Nimi13
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Detailed Information for Phage Nimi13
Discovery Information
Isolation HostGordonia terrae 3612
Found ByNimisha Rajesh
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.445142 N, 79.961729 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 24, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage809
Genome length (bp)73594
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length184 bp
GC Content59.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Lysogeny NotesThe cloudy morphology reveals a lysogenic phage.
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque NotesNimi13 had a concentration of 10^0 (neat sample). The repeated serial dilutions have revealed a cloudy, small, and circular morphology with .5mm diameter plaques.
Has been Phamerated?Yes
Gene List

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Nimi13_1

Nimi13_2

Nimi13_3

Nimi13_4

Nimi13_5
(DNA primase)

Nimi13_6

Nimi13_7
(terminase)

Nimi13_8
(portal protein)

Nimi13_9

Nimi13_10

Nimi13_11
(capsid maturation protease)

Nimi13_12
(capsid decoration protein)

Nimi13_13
(major capsid protein)

Nimi13_14

Nimi13_15

Nimi13_16
(head-to-tail adaptor)

Nimi13_17

Nimi13_18

Nimi13_19

Nimi13_20
(major tail protein)

Nimi13_22
(tail assembly chaperone)

Nimi13_23
(tail assembly chaperone)

Nimi13_24
(tape measure protein)

Nimi13_25
(minor tail protein)

Nimi13_26
(minor tail protein)

Nimi13_27
(minor tail protein)

Nimi13_28

Nimi13_29

Nimi13_30

Nimi13_31

Nimi13_32

Nimi13_33

Nimi13_34

Nimi13_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Nimi13_36
(lysin A, protease M23 domain)

Nimi13_37

Nimi13_38

Nimi13_39

Nimi13_40

Nimi13_41
(Cas4 family exonuclease)

Nimi13_42

Nimi13_43

Nimi13_44

Nimi13_45

Nimi13_46
(DNA methylase)

Nimi13_47

Nimi13_48

Nimi13_49
(MazG-like nucleotide pyrophosphohydrolase)

Nimi13_50
(RusA-like resolvase)

Nimi13_51

Nimi13_52
(DNA polymerase III sliding clamp)

Nimi13_53

Nimi13_54
(DNA polymerase III subunit)

Nimi13_55
(helix-turn-helix DNA binding protein)

Nimi13_56

Nimi13_57
(DNA helicase)

Nimi13_58

Nimi13_59

Nimi13_60

Nimi13_61
(helix-turn-helix DNA binding protein)

Nimi13_62

Nimi13_63

Nimi13_64

Nimi13_65

Nimi13_66

Nimi13_67

Nimi13_68

Nimi13_69

Nimi13_70

Nimi13_71

Nimi13_72

Nimi13_73

Nimi13_74

Nimi13_75

Nimi13_76

Nimi13_77

Nimi13_78

Nimi13_79

Nimi13_80
(CobT-like cobalamin biosynthesis protein)

Nimi13_81
(AAA-ATPase)

Nimi13_82

Nimi13_83

Nimi13_84

Nimi13_85

Nimi13_86

Nimi13_87

Nimi13_88

Nimi13_89

Nimi13_90

Nimi13_91

Nimi13_92

Nimi13_93

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK494121
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 42
Pitt Freezer Box Grid# F9
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload