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Gordonia phage Jellybones
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Detailed Information for Phage Jellybones
Discovery Information
Isolation HostGordonia rubripertincta NRRL B-16540
Found BySamantha J Pochiro
Year Found2018
Location FoundHenderson, NV USA
Finding InstitutionCollege of Southern Nevada
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates36.076304 N, 115.002681 W Map
Discovery Notes•The sample was collected at the City of Henderson Bird Viewing Preserve along the north east side of pond number 2
•The coordinates of the location is: 36.076304, -115.002681
•The sample was dry and had a lot of small twigs or broken root parts in it. I dug about an inch or two below the surface until I saw darker sand underneath the surface.
•It was collected in Henderson, NV on 9/5/18.
Naming NotesJellybones was named after a song from the band The Unicorns.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 2, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1592
Genome length (bp)77514
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content59.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionCollege of Southern Nevada
Annotation StatusIn GenBank
Plaque NotesThe phage produced small plaques ranging from 1/2mm to 1mm in size with distinct borders
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Jellybones_1

Jellybones_2

Jellybones_3

Jellybones_4

Jellybones_5

Jellybones_6

Jellybones_7

Jellybones_8
(DNA primase)

Jellybones_9

Jellybones_10
(terminase)

Jellybones_11
(portal protein)

Jellybones_12
(hydrolase)

Jellybones_13

Jellybones_14
(capsid maturation protease)

Jellybones_15
(scaffolding protein)

Jellybones_16
(major capsid protein)

Jellybones_17

Jellybones_18

Jellybones_19
(head-to-tail adaptor)

Jellybones_20

Jellybones_21

Jellybones_22

Jellybones_23
(major tail protein)

Jellybones_25
(tail assembly chaperone)

Jellybones_26
(tail assembly chaperone)

Jellybones_27
(tape measure protein)

Jellybones_28
(minor tail protein)

Jellybones_29
(minor tail protein)

Jellybones_30
(minor tail protein)

Jellybones_31

Jellybones_32

Jellybones_33

Jellybones_34

Jellybones_35

Jellybones_36
(membrane protein)

Jellybones_37

Jellybones_38
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Jellybones_39
(lysin A, protease domain)

Jellybones_40
(membrane protein)

Jellybones_41
(membrane protein)

Jellybones_42

Jellybones_43
(membrane protein)

Jellybones_44
(Cas4 family exonuclease)

Jellybones_45

Jellybones_46

Jellybones_47

Jellybones_48

Jellybones_49
(DNA methylase)

Jellybones_50

Jellybones_51

Jellybones_52
(lysin B)

Jellybones_53
(MazG-like nucleotide pyrophosphohydrolase)

Jellybones_54

Jellybones_55
(RusA-like resolvase (endonuclease))

Jellybones_56

Jellybones_57
(DNA polymerase III sliding clamp (Beta))

Jellybones_58
(DnaQ-like (DNA polymerase III subunit))

Jellybones_59

Jellybones_60

Jellybones_61
(DNA helicase)

Jellybones_62

Jellybones_63

Jellybones_64

Jellybones_65
(helix-turn-helix DNA binding domain)

Jellybones_66

Jellybones_67

Jellybones_68

Jellybones_69

Jellybones_70

Jellybones_71

Jellybones_72

Jellybones_73

Jellybones_74

Jellybones_75

Jellybones_76

Jellybones_77

Jellybones_78

Jellybones_79

Jellybones_80

Jellybones_81

Jellybones_82

Jellybones_83
(HNH endonuclease)

Jellybones_84

Jellybones_85

Jellybones_86

Jellybones_87
(membrane protein)

Jellybones_88

Jellybones_89
(CobT-like cobalamine biosynthesis protein)

Jellybones_90
(AAA-ATPase)

Jellybones_91

Jellybones_92

Jellybones_93

Jellybones_94

Jellybones_95

Jellybones_96

Jellybones_97

Jellybones_98

Jellybones_99

Jellybones_100

Jellybones_101

Jellybones_102

Jellybones_103
(membrane protein)

Jellybones_104

Jellybones_105

Jellybones_106

Jellybones_107

Jellybones_108

Jellybones_109

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN444874
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 80
Pitt Freezer Box Grid# H2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload