Gordonia phage GourdThymes
GourdThymes Plaque Picture
GourdThymes EM Picture
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(G. terrae 3612)
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Detailed Information for Phage GourdThymes
Discovery Information
Isolation HostGordonia terrae 3612
Found BySrija Konduru
Year Found2019
Location FoundHummelstown, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.24 N, 76.72 W Map
Discovery NotesIt has not rained in a while, so the soil was quite dry.
Isolated in September, so the leaves were starting to fall and the garden plants were starting to die.
Soil was isolated from a garden, surrounded by trees, with pink roses, yellow cucumber, (red, green, and black) chillies, herbs, and tomatoes.
Naming NotesA pun about the vegetation from the garden where the soil was taken from (cucumbers and herbs).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 6, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage901
Genome length (bp)75807
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members

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Amore2 (CS1)

Austin (CS1)

GMA7 (CS1)

GTE7 (CS1)

HayZem (CS1)

Adgers (CS2)

Barbochs (CS2)

Beaver (CS2)

BirksAndSocks (CS2)

Boneham (CS2)

Breezic (CS2)

Butterball (CS2)

Chelms (CS2)

Dakiti (CS2)

Diabla (CS2)

Ekhein (CS2)

Exiguo (CS2)

FelixAlejandro (CS2)

Flakey (CS2)

Gorko (CS2)

GourdThymes (CS2)

Hotorobo (CS2)

Jellybones (CS2)

John316 (CS2)

Linetti (CS2)

Lizzo (CS2)

Monty (CS2)

Msay19 (CS2)

PierreThree (CS2)

PokyPuppy (CS2)

RemRem (CS2)

RoyalG (CS2)

Sam12 (CS2)

Sombrero (CS2)

SteveFrench (CS2)

Anamika (CS3)

Bianmat (CS3)

GalacticEye (CS3)

Guillaume (CS3)

Hail2Pitt (CS3)

Harambe (CS3)

Hello (CS3)

Jams (CS3)

Jormungandr (CS3)

Lahirium (CS3)

Lidong (CS3)

Luker (CS3)

Minos (CS3)

MrWormie (CS3)

Neoevie (CS3)

Newt (CS3)

Nimi13 (CS3)

Shelley (CS3)

Sticker17 (CS3)

Teal (CS3)

Woes (CS3)

ASerpRocky (CS4)

Benczkowski14 (CS4)

Demosthenes (CS4)

Hollow (CS4)

Katyusha (CS4)

Kvothe (CS4)

Niagara (CS4)

Philon9 (CS4)

Teatealatte (CS4)

Tredge (CS4)
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe plaques for Phage GourdThymes are relatively small (<2mm in diameter) and clear.
Has been Phamerated?Yes
Gene List

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GourdThymes_1

GourdThymes_2

GourdThymes_3

GourdThymes_4
(DNA binding protein)

GourdThymes_5

GourdThymes_6

GourdThymes_7

GourdThymes_8
(DNA primase/polymerase)

GourdThymes_9
(terminase small subunit)

GourdThymes_10
(terminase large subunit)

GourdThymes_11
(portal protein)

GourdThymes_12
(hydrolase)

GourdThymes_13

GourdThymes_14
(capsid maturation protease)

GourdThymes_15
(capsid decoration protein)

GourdThymes_16
(major capsid protein)

GourdThymes_17

GourdThymes_18

GourdThymes_19
(head-to-tail adaptor)

GourdThymes_20

GourdThymes_21

GourdThymes_22

GourdThymes_23
(major tail protein)

GourdThymes_25
(tail assembly chaperone)

GourdThymes_26
(tail assembly chaperone)

GourdThymes_27
(tape measure protein)

GourdThymes_28
(minor tail protein)

GourdThymes_29
(minor tail protein)

GourdThymes_30
(minor tail protein)

GourdThymes_31

GourdThymes_32
(holin)

GourdThymes_33

GourdThymes_34
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

GourdThymes_35
(lysin A, protease M23 domain)

GourdThymes_36

GourdThymes_37

GourdThymes_38

GourdThymes_39

GourdThymes_40
(Cas4 family exonuclease)

GourdThymes_41
(WhiB family transcription factor)

GourdThymes_42

GourdThymes_43

GourdThymes_44

GourdThymes_45

GourdThymes_46
(DNA methylase)

GourdThymes_47

GourdThymes_48

GourdThymes_49
(lysin B)

GourdThymes_50
(MazG-like nucleotide pyrophosphohydrolase)

GourdThymes_51

GourdThymes_52
(RusA-like resolvase)

GourdThymes_53

GourdThymes_54
(nucleoside deoxyribosyltransferase)

GourdThymes_55
(DNA polymerase III sliding clamp)

GourdThymes_56
(DnaQ-like DNA polymerase III)

GourdThymes_57
(helix-turn-helix DNA binding domain protein)

GourdThymes_58

GourdThymes_59
(DNA helicase)

GourdThymes_60

GourdThymes_61

GourdThymes_62

GourdThymes_63
(helix-turn-helix DNA binding domain protein)

GourdThymes_64

GourdThymes_65

GourdThymes_66

GourdThymes_67

GourdThymes_68

GourdThymes_69

GourdThymes_70
(DNA binding protein)

GourdThymes_71

GourdThymes_72

GourdThymes_73

GourdThymes_74

GourdThymes_75

GourdThymes_76

GourdThymes_77

GourdThymes_78

GourdThymes_79

GourdThymes_80

GourdThymes_81

GourdThymes_82

GourdThymes_83

GourdThymes_84

GourdThymes_85

GourdThymes_86

GourdThymes_87

GourdThymes_88
(CobT-like cobalamin biosynthesis protein)

GourdThymes_89
(AAA-ATPase)

GourdThymes_90

GourdThymes_91

GourdThymes_92

GourdThymes_93

GourdThymes_94

GourdThymes_95

GourdThymes_96

GourdThymes_97

GourdThymes_98

GourdThymes_99

GourdThymes_100

GourdThymes_101

GourdThymes_102

GourdThymes_103

GourdThymes_104

GourdThymes_105

GourdThymes_106
Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMT889370
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 114
Pitt Freezer Box Grid# D6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload