Gordonia phage Gorko

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Detailed Information for Phage Gorko
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAli Schultz
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Discovery NotesThe temperature was 30 degrees Fahrenheit at the time of collection and it was snowing.
The weather conditions in the past 24 hours were around 45 degrees Fahrenheit and slight rain. Soil conditions: soil was moist with lots of pebbles and dead leaves.
Naming NotesLong story short, I was talking about baby names with a friend over text. I made a longish list of normal, everyday names, and I slid in Gorko in the middle of it to see if my friend would say anything. Little did they know, Gorko is my baby (phage of course).
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 26, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1064
Genome length (bp)75158
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content59.0%
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesClear
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Gorko_1

Gorko_2

Gorko_3

Gorko_4

Gorko_5

Gorko_6

Gorko_7

Gorko_8
(DNA primase)

Gorko_9

Gorko_10

Gorko_11
(portal protein)

Gorko_12

Gorko_13

Gorko_14
(capsid maturation protease)

Gorko_15
(capsid decoration protein)

Gorko_16
(major capsid protein)

Gorko_17

Gorko_18

Gorko_19
(head-to-tail adaptor)

Gorko_20

Gorko_21

Gorko_22

Gorko_23
(major tail protein)

Gorko_25
(tail assembly chaperone)

Gorko_26
(tail assembly chaperone)

Gorko_27
(tape measure protein)

Gorko_28
(minor tail protein)

Gorko_29
(minor tail protein)

Gorko_30
(minor tail protein)

Gorko_31

Gorko_32

Gorko_33
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Gorko_34
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Gorko_35
(lysin A, protease M23 domain)

Gorko_36

Gorko_37

Gorko_38

Gorko_39

Gorko_40
(Cas4 family exonuclease)

Gorko_41
(WhiB family transcription factor)

Gorko_42

Gorko_43

Gorko_44

Gorko_45

Gorko_46
(DNA methylase)

Gorko_47

Gorko_48

Gorko_49
(lysin B)

Gorko_50
(MazG-like nucleotide pyrophosphohydrolase)

Gorko_51

Gorko_52
(RusA-like resolvase)

Gorko_53

Gorko_54
(DNA polymerase III sliding clamp)

Gorko_55
(DNA polymerase III subunit)

Gorko_56
(helix-turn-helix DNA binding protein)

Gorko_57

Gorko_58
(DNA helicase)

Gorko_59

Gorko_60

Gorko_61

Gorko_62
(helix-turn-helix DNA binding protein)

Gorko_63

Gorko_64

Gorko_65

Gorko_66

Gorko_67

Gorko_68

Gorko_69

Gorko_70

Gorko_71

Gorko_72

Gorko_73

Gorko_74

Gorko_75

Gorko_76

Gorko_77

Gorko_78

Gorko_79

Gorko_80

Gorko_81

Gorko_82

Gorko_83

Gorko_84

Gorko_85

Gorko_86
(CobT-like cobalamin biosynthesis protein)

Gorko_87

Gorko_88
(AAA-ATPase)

Gorko_89

Gorko_90

Gorko_91

Gorko_92

Gorko_93

Gorko_94

Gorko_95

Gorko_96

Gorko_97

Gorko_98

Gorko_99

Gorko_100

Gorko_101

Gorko_102

Gorko_103

Gorko_104

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK801728
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 3.3 x 10^10
Pitt Freezer Box# 3
Pitt Freezer Box Grid# D8
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload