Gordonia phage Sombrero
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Detailed Information for Phage Sombrero
Discovery Information
Isolation HostGordonia terrae 3612
Found ByConnor Roan
Year Found2017
Location FoundRuston, LA USA
Finding InstitutionUniversity of Louisiana at Monroe
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates32.53122 N, 92.65086 W Map
Discovery NotesIt was soil near a walkway on Louisiana Tech's campus, near the Caruther's apartments, near the recreation center. It was dark dirt.
Naming NotesThe spot of the filtrate looks like a sombrero.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 16, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage839
Genome length (bp)76485
Character of genome endsDirect Terminal Repeat
Overhang Length201 bases
GC Content59.0%
Sequencing Notesat position 39347 bp approximately 20% of reads contain a T instead of consensus G
at position 43529 bp approximately 20% of reads contain an A instead of consensus G
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Sombrero_1

Sombrero_2

Sombrero_3

Sombrero_4
(DNA binding protein)

Sombrero_5

Sombrero_6

Sombrero_7

Sombrero_8
(DNA primase)

Sombrero_9
(terminase, small subunit)

Sombrero_10
(terminase, large subunit)

Sombrero_11
(portal protein)

Sombrero_12
(hydrolase)

Sombrero_13

Sombrero_14
(capsid maturation protease)

Sombrero_15
(scaffolding protein)

Sombrero_16
(major capsid protein)

Sombrero_17

Sombrero_18

Sombrero_19
(head-to-tail adaptor)

Sombrero_20

Sombrero_21

Sombrero_22

Sombrero_23
(major tail protein)

Sombrero_25
(tail assembly chaperone)

Sombrero_26
(tail assembly chaperone)

Sombrero_27
(tape measure protein)

Sombrero_28
(minor tail protein)

Sombrero_29
(minor tail protein)

Sombrero_30
(minor tail protein)

Sombrero_31

Sombrero_32
(membrane protein)

Sombrero_33

Sombrero_34
(lysin A, N-acetyl-beta-D-muramidase domain)

Sombrero_35
(lysin A, peptidase domain)

Sombrero_36
(membrane protein)

Sombrero_37
(membrane protein)

Sombrero_38

Sombrero_39

Sombrero_40
(exonuclease)

Sombrero_41

Sombrero_42

Sombrero_43

Sombrero_44

Sombrero_45

Sombrero_46

Sombrero_47
(DNA methylase)

Sombrero_48

Sombrero_49

Sombrero_50
(lysin B)

Sombrero_51
(MazG-like nucleotide pyrophosphohydrolase)

Sombrero_52

Sombrero_53
(RusA-like resolvase)

Sombrero_54

Sombrero_55
(DNA polymerase III sliding clamp (Beta))

Sombrero_56

Sombrero_57
(DnaQ-like (DNA polymerase III subunit))

Sombrero_58
(helix-turn-helix DNA binding domain)

Sombrero_59

Sombrero_60
(DNA helicase)

Sombrero_61

Sombrero_62

Sombrero_63

Sombrero_64
(helix-turn-helix DNA binding domain)

Sombrero_65

Sombrero_66

Sombrero_67

Sombrero_68

Sombrero_69

Sombrero_70

Sombrero_71

Sombrero_72

Sombrero_73

Sombrero_74

Sombrero_75

Sombrero_76

Sombrero_77

Sombrero_78

Sombrero_79

Sombrero_80

Sombrero_81

Sombrero_82

Sombrero_83
(HNH endonuclease)

Sombrero_84

Sombrero_85

Sombrero_86

Sombrero_87

Sombrero_88

Sombrero_89
(CobT-like cobalamin biosynthesis protein)

Sombrero_90
(AAA-ATPase)

Sombrero_91

Sombrero_92

Sombrero_93

Sombrero_94

Sombrero_95

Sombrero_96

Sombrero_97

Sombrero_98

Sombrero_99

Sombrero_100

Sombrero_101

Sombrero_102

Sombrero_103

Sombrero_104

Sombrero_105

Sombrero_106

Sombrero_107

Sombrero_108

Sombrero_109

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359302
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 59
Pitt Freezer Box Grid# D8
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload