Gordonia phage Lahirium
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Detailed Information for Phage Lahirium
Discovery Information
Isolation HostGordonia terrae 3612
Found ByRajat K. Lahiri
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature4°C
GPS Coordinates40.445314 N, 79.961672 W Map
Discovery NotesPhage Lahirium was discovered on August 28th, 2016. The weather was Sunny, 94 degrees Fahrenheit, and 87% Humidity Phage Lahirium was found in a soil sample that was black, slightly damp, and 1-2 inches below surface.
Naming NotesPhage Lahirium is named after its discoverer, Rajat K. Lahiri.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 10, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1114
Genome length (bp)73885
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length184 bp
GC Content59.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque NotesThe plaque morphology of Lahirium is very clear, circular, and have diameters of ~1mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Lahirium_1

Lahirium_2

Lahirium_3

Lahirium_4

Lahirium_5
(DNA primase)

Lahirium_6

Lahirium_7
(terminase)

Lahirium_8
(portal protein)

Lahirium_9

Lahirium_10

Lahirium_11
(capsid maturation protease)

Lahirium_12
(capsid decoration protein)

Lahirium_13
(major capsid protein)

Lahirium_14

Lahirium_15

Lahirium_16
(head-to-tail adaptor)

Lahirium_17

Lahirium_18

Lahirium_19

Lahirium_20
(major tail protein)

Lahirium_22
(tail assembly chaperone)

Lahirium_23
(tail assembly chaperone)

Lahirium_24
(tape measure protein)

Lahirium_25
(minor tail protein)

Lahirium_26
(minor tail protein)

Lahirium_27
(minor tail protein)

Lahirium_28

Lahirium_29

Lahirium_30

Lahirium_31

Lahirium_32

Lahirium_33

Lahirium_34

Lahirium_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Lahirium_36
(lysin A, protease M23 domain)

Lahirium_37

Lahirium_38

Lahirium_39

Lahirium_40

Lahirium_41
(Cas4 family exonuclease)

Lahirium_42

Lahirium_43

Lahirium_44

Lahirium_45

Lahirium_46
(DNA methylase)

Lahirium_47

Lahirium_48

Lahirium_49
(MazG-like nucleotide pyrophosphohydrolase)

Lahirium_50
(RusA-like resolvase)

Lahirium_51

Lahirium_52
(DNA polymerase III sliding clamp)

Lahirium_53

Lahirium_54
(DNA polymerase III subunit)

Lahirium_55
(helix-turn-helix DNA binding protein)

Lahirium_56

Lahirium_57
(DNA helicase)

Lahirium_58

Lahirium_59

Lahirium_60

Lahirium_61
(helix-turn-helix DNA binding protein)

Lahirium_62

Lahirium_63

Lahirium_64

Lahirium_65

Lahirium_66

Lahirium_67

Lahirium_68

Lahirium_69

Lahirium_70

Lahirium_71

Lahirium_72

Lahirium_73

Lahirium_74

Lahirium_75

Lahirium_76

Lahirium_77

Lahirium_78

Lahirium_79

Lahirium_80

Lahirium_81
(CobT-like cobalamin biosynthesis protein)

Lahirium_82
(AAA-ATPase)

Lahirium_83

Lahirium_84

Lahirium_85

Lahirium_86

Lahirium_87

Lahirium_88

Lahirium_89

Lahirium_90

Lahirium_91

Lahirium_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK494109
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Date of SEA Lysate Titering Oct 5, 2016
Pitt Freezer Box# 42
Pitt Freezer Box Grid# E12
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload