Gordonia phage Harambe
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Detailed Information for Phage Harambe
Discovery Information
Isolation HostGordonia terrae 3612
Found ByCorbin Fry
Year Found2016
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.445986 N, 79.953236 W Map
Discovery NotesThe soil was collected on a sunny partly cloudy day with dry weather on the past 24 hours. The gps coordinates were N 40° 15' 52.4622" W -79° 34' 16.3992". This soil will be used to isolate possible phages in it through direct and enriched isolation. The soil was collected in a zip-lock bag outside of Clapp Hall at the University of Pittsburgh.
Naming NotesThis is named after a pet.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 31, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1160
Genome length (bp)73511
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length184 bp
GC Content59.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Lysogeny NotesLytic Phage
Other Cluster Members
Annotating InstitutionUniversity of Wisconsin-River Falls
Annotation StatusIn GenBank
Plaque NotesSmall clear circluar plaques
Has been Phamerated?Yes
Gene List

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Harambe_1

Harambe_2

Harambe_3

Harambe_4

Harambe_5
(DNA primase)

Harambe_6

Harambe_7
(terminase)

Harambe_8
(portal protein)

Harambe_9

Harambe_10

Harambe_11
(capsid maturation protease)

Harambe_12
(capsid decoration protein)

Harambe_13
(major capsid protein)

Harambe_14

Harambe_15

Harambe_16
(head-to-tail adaptor)

Harambe_17

Harambe_18

Harambe_19

Harambe_20
(major tail protein)

Harambe_22
(tail assembly chaperone)

Harambe_23
(tail assembly chaperone)

Harambe_24
(tape measure protein)

Harambe_25
(minor tail protein)

Harambe_26
(minor tail protein)

Harambe_27
(minor tail protein)

Harambe_28

Harambe_29

Harambe_30

Harambe_31

Harambe_32

Harambe_33

Harambe_34

Harambe_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Harambe_36
(lysin A, protease M23 domain)

Harambe_37

Harambe_38

Harambe_39

Harambe_40

Harambe_41
(Cas4 family exonuclease)

Harambe_42

Harambe_43

Harambe_44

Harambe_45

Harambe_46
(DNA methylase)

Harambe_47

Harambe_48

Harambe_49
(MazG-like nucleotide pyrophosphohydrolase)

Harambe_50
(RusA-like resolvase)

Harambe_51

Harambe_52
(DNA polymerase III sliding clamp)

Harambe_53

Harambe_54
(DNA polymerase III subunit)

Harambe_55
(helix-turn-helix DNA binding protein)

Harambe_56

Harambe_57
(DNA helicase)

Harambe_58

Harambe_59

Harambe_60

Harambe_61
(helix-turn-helix DNA binding protein)

Harambe_62

Harambe_63

Harambe_64

Harambe_65

Harambe_66

Harambe_67

Harambe_68

Harambe_69

Harambe_70

Harambe_71

Harambe_72

Harambe_73

Harambe_74

Harambe_75

Harambe_76

Harambe_77

Harambe_78

Harambe_79

Harambe_80
(CobT-like cobalamin biosynthesis protein)

Harambe_81
(AAA-ATPase)

Harambe_82

Harambe_83

Harambe_84

Harambe_85

Harambe_86

Harambe_87

Harambe_88

Harambe_89

Harambe_90

Harambe_91

Harambe_92

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK450430
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 5.0 x 10^9
Date of SEA Lysate Titering Oct 26, 2016
Pitt Freezer Box# 42
Pitt Freezer Box Grid# E2
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload