Gordonia phage Kvothe
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Detailed Information for Phage Kvothe
Discovery Information
Isolation HostGordonia terrae 3612
Found ByPatrick Rimple
Year Found2015
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates40.397473 N, 79.946539 W Map
Discovery NotesThis was collect from the soil surrounding a post that was driven into the ground along the GAP trail over looking the river. It was collected from the top layers of the soil. It was sunny and hot, 85 degrees F that day.
Naming NotesKvothe is the name of one of my favorite characters so I thought to name a phage after him was fitting. Especially a phage that has such small plaques since most people underestimate Kvothe. It is pronounced very similarly to quothe.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 3, 2015
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage737
Genome length (bp)75462
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1172 bp
GC Content59.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUnknown or unassigned
Annotation StatusIn GenBank
Plaque NotesSmall clear plaques. Most under are 1mm in size, like pin pricks, but some are larger which are between 1mm and 2mm in size.
Number of Genes99
Has been Phamerated?Yes
Gene List

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Kvothe_1

Kvothe_2

Kvothe_3
(DNA helicase)

Kvothe_4

Kvothe_5

Kvothe_6

Kvothe_7

Kvothe_8
(DNA primase)

Kvothe_9

Kvothe_10
(terminase)

Kvothe_11
(portal protein)

Kvothe_12
(minor tail protein)

Kvothe_13

Kvothe_14
(capsid maturation protease)

Kvothe_15
(capsid decoration protein)

Kvothe_16
(major capsid protein)

Kvothe_17

Kvothe_18

Kvothe_19
(head-to-tail adaptor)

Kvothe_20

Kvothe_21

Kvothe_22

Kvothe_23
(major tail protein)

Kvothe_24
(tail assembly chaperone)

Kvothe_25
(tail assembly chaperone)

Kvothe_26
(tape measure protein)

Kvothe_27
(minor tail protein)

Kvothe_28
(minor tail protein)

Kvothe_29
(minor tail protein)

Kvothe_30

Kvothe_31

Kvothe_32

Kvothe_33
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Kvothe_34
(lysin A, protease M23 domain)

Kvothe_35

Kvothe_36

Kvothe_37

Kvothe_38
(Cas4 family exonuclease)

Kvothe_39
(WhiB family transcription factor)

Kvothe_40

Kvothe_41

Kvothe_42
(DNA methylase)

Kvothe_43

Kvothe_44
(lysin B)

Kvothe_45
(MazG-like nucleotide pyrophosphohydrolase)

Kvothe_46

Kvothe_47
(RusA-like resolvase)

Kvothe_48

Kvothe_49
(DNA polymerase III sliding clamp)

Kvothe_50

Kvothe_51
(DNA polymerase III subunit)

Kvothe_52
(helix-turn-helix DNA binding protein)

Kvothe_53

Kvothe_54

Kvothe_55

Kvothe_56
(DNA helicase)

Kvothe_57

Kvothe_58

Kvothe_59

Kvothe_60

Kvothe_61

Kvothe_62

Kvothe_63

Kvothe_64

Kvothe_65

Kvothe_66

Kvothe_67

Kvothe_68

Kvothe_69

Kvothe_70

Kvothe_71

Kvothe_72

Kvothe_73

Kvothe_74

Kvothe_75

Kvothe_76

Kvothe_77
(HNH endonuclease)

Kvothe_78

Kvothe_79

Kvothe_80

Kvothe_81
(CobT-like cobalamin biosynthesis protein)

Kvothe_82

Kvothe_83

Kvothe_84

Kvothe_85
(AAA-ATPase)

Kvothe_86

Kvothe_87

Kvothe_88

Kvothe_89

Kvothe_90

Kvothe_91

Kvothe_92

Kvothe_93

Kvothe_94

Kvothe_95

Kvothe_96

Kvothe_97

Kvothe_98

Kvothe_99

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKU998243
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 4
Pitt Freezer Box Grid# G8
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload