Detailed Information for Phage CocoaPuff |
Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Chloe Davis |
Year Found | 2025 |
Location Found | Pittsburgh, PA United States |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | 30°C |
GPS Coordinates | 40.454197 N, 79.944026 W Map |
Discovery Notes | Akarshana Rajesh Iman Azeez Siya Saraswat |
Naming Notes | We chose this name because it's what brought us together. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Aug 7, 2025 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina NextSeq 1000 |
Read Type | Paired-end reads |
Read Length | 300 bp |
Approximate Shotgun Coverage | 10580 |
Genome length (bp) | 47200 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 10 bases |
Overhang Sequence | CGGTAGGCTT |
GC Content | 60.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CT |
Subcluster | -- |
Cluster Life Cycle | Lytic |
Other Cluster Members |
|
Annotating Institution | University of Pittsburgh |
Annotation Status | Being Annotated (Expected completion by 12/31/2025) |
Number of Genes | 70 |
Number of tRNAs | 0 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
216 |
Pitt Freezer Box Grid# |
C9 |
Available Files |
Plaque Picture | Download |