Gordonia phage RemRem
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Detailed Information for Phage RemRem
Discovery Information
Isolation HostGordonia terrae 3612
Found ByM. Coffey; A. Ampofo; K. Sindhar; T. Limberg;
Year Found2022
Location FoundPittsburgh, PA United States of America
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature30°C
GPS Coordinates40.43313 N, 79.95722 W Map
Discovery NotesOur soil sample was collected by one of our UTA's that we adopted, and eventually chose as our sample to continue with throughout our experiments.
Naming NotesNamed after Krithi's dog named Remy.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedApr 18, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage612
Genome length (bp)75965
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content59.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPhage RemRem plaques were all between 1 and 2 mm in diameter. Plaques are slightly turbid.
Number of Genes109
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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RemRem_1

RemRem_2

RemRem_3

RemRem_4

RemRem_5

RemRem_6

RemRem_7

RemRem_8
(DNA primase)

RemRem_9
(terminase small subunit)

RemRem_10
(terminase large subunit)

RemRem_11

RemRem_12
(portal protein)

RemRem_13
(minor tail protein)

RemRem_14

RemRem_15
(capsid maturation protease)

RemRem_16
(capsid decoration protein)

RemRem_17
(major capsid protein)

RemRem_18

RemRem_19

RemRem_20
(head-to-tail adaptor)

RemRem_21

RemRem_22

RemRem_23

RemRem_24
(major tail protein)

RemRem_25 — tRNA
(tRNA-Asn(gtt))

RemRem_26
(tail assembly chaperone)

RemRem_27
(tail assembly chaperone)

RemRem_28
(tape measure protein)

RemRem_29
(minor tail protein)

RemRem_30
(minor tail protein)

RemRem_31
(minor tail protein)

RemRem_32

RemRem_33
(holin)

RemRem_34

RemRem_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

RemRem_36
(lysin A, protease M23 domain)

RemRem_37

RemRem_38

RemRem_39

RemRem_40

RemRem_41
(Cas4 exonuclease)

RemRem_42
(WhiB family transcription factor)

RemRem_43

RemRem_44

RemRem_45

RemRem_46

RemRem_47
(DNA methyltransferase)

RemRem_48

RemRem_49

RemRem_50
(lysin B)

RemRem_51
(MazG-like nucleotide pyrophosphohydrolase)

RemRem_52

RemRem_53
(RusA-like resolvase)

RemRem_54

RemRem_55
(nucleoside deoxyribosyltransferase)

RemRem_56
(DNA polymerase III sliding clamp beta)

RemRem_57
(DnaQ-like DNA polymerase III subunit)

RemRem_58
(helix-turn-helix DNA binding domain protein)

RemRem_59

RemRem_60
(DNA helicase)

RemRem_61

RemRem_62

RemRem_63

RemRem_64

RemRem_65

RemRem_66

RemRem_67

RemRem_68

RemRem_69

RemRem_70

RemRem_71

RemRem_72

RemRem_73

RemRem_74

RemRem_75

RemRem_76

RemRem_77

RemRem_78

RemRem_79

RemRem_80

RemRem_81

RemRem_82

RemRem_83

RemRem_84

RemRem_85
(HNH endonuclease)

RemRem_86

RemRem_87

RemRem_88

RemRem_89

RemRem_90

RemRem_91
(CobT-like cobalamin biosynthesis protein)

RemRem_92
(AAA-ATPase)

RemRem_93

RemRem_94

RemRem_95

RemRem_96

RemRem_97

RemRem_98

RemRem_99

RemRem_100

RemRem_101

RemRem_102

RemRem_103

RemRem_104

RemRem_105

RemRem_106

RemRem_107

RemRem_108

RemRem_109

RemRem_110

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPP208927
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 159
Pitt Freezer Box Grid# G10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload