Detailed Information for Phage RemRem |
Discovery Information |
Isolation Host | Gordonia terrae 3612 |
Found By | M. Coffey; A. Ampofo; K. Sindhar; T. Limberg; |
Year Found | 2022 |
Location Found | Pittsburgh, PA United States of America |
Finding Institution | University of Pittsburgh |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | 30°C |
GPS Coordinates | 40.43313 N, 79.95722 W Map |
Discovery Notes | Our soil sample was collected by one of our UTA's that we adopted, and eventually chose as our sample to continue with throughout our experiments. |
Naming Notes | Named after Krithi's dog named Remy. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Apr 18, 2023 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 612 |
Genome length (bp) | 75965 |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 191 bp |
GC Content | 59.0% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CS |
Subcluster | CS2 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | University of Pittsburgh |
Annotation Status | In GenBank |
Plaque Notes | Phage RemRem plaques were all between 1 and 2 mm in diameter. Plaques are slightly turbid. |
Number of Genes | 109 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | PP208927 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
159 |
Pitt Freezer Box Grid# |
G10 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
GenBank File for Phamerator | Download |