Streptomyces phage South40
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Detailed Information for Phage South40
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found ByAlison Deng and John Georgiades
Year Found2020
Location FoundSt. Louis, MO United States
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature14°C
GPS Coordinates38.644689 N, 90.314689 W Map
Discovery NotesDate of collection: 09/29/2020
Time of collection: 10:00 AM CDT
Depth below the surface: 8 cm
Notable nearby objects: picnic table, several trees, a walking path, and a dormitory.
Soil moisture: Dry
Soil quality: Sandy
Humidity: 67%
Atmospheric Pressure: 745.7 mmHg
Naming NotesWe decided to name our phage South40 because our soil sample was collected from the forty-acre residential area of our university's campus that we lovingly refer to as the South 40.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 18, 2021
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage187
Genome length (bp)51271
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGGTCAGTGAT
GC Content65.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD1
Cluster Life CycleTemperate
Other Cluster Members

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Aaronocolus (BD1)

Asten (BD1)

BarryBee (BD1)

BeardedLady (BD1)

Bovely (BD1)

Brataylor (BD1)

BryanRecycles (BD1)

Caliburn (BD1)

Celeste (BD1)

Chucky (BD1)

Danzina (BD1)

Dattran (BD1)

Dwayne (BD1)

Eddasa (BD1)

Ejemplo (BD1)

Emaanora (BD1)

EnochSoames (BD1)

Esperer (BD1)

Goby (BD1)

Godpower (BD1)

Hippo (BD1)

Hydra (BD1)

Indigo (BD1)

Izzy (BD1)

Jash (BD1)

Katalie (BD1)

Lannister (BD1)

Legacy (BD1)

Leviticus (BD1)

Lika (BD1)

Lorelei (BD1)

Maneekul (BD1)

Nabi (BD1)

Nanodon (BD1)

Nerdos (BD1)

Oliynyk (BD1)

Ozzie (BD1)

OzzyJ (BD1)

Phettuccine (BD1)

Rana (BD1)

RedBear (BD1)

Rusticus (BD1)

SarahRose (BD1)

Snorlax (BD1)

South40 (BD1)

Sujidade (BD1)

SunsetPointe (BD1)

TagePhighter (BD1)

Toma (BD1)

Triste (BD1)

TuanPN (BD1)

Unstoppable (BD1)

Werner (BD1)

Whatever (BD1)

Yasdnil (BD1)

Zemlya (BD1)

Alvy (BD2)

Amethyst (BD2)

Andris (BD2)

Animus (BD2)

BartholomewSD (BD2)

Bowden (BD2)

Caelum (BD2)

Daudau (BD2)

Diane (BD2)

ELB20 (BD2)

GirlDinner (BD2)

Haizum (BD2)

Hank144 (BD2)

Issmi (BD2)

Janus (BD2)

Jevington (BD2)

Loofah (BD2)

Marav (BD2)

Nishikigoi (BD2)

Omar (BD2)

Pablito (BD2)

Paedore (BD2)

Paolo (BD2)

Puginator (BD2)

R4 (BD2)

SqueakyClean (BD2)

Superstar (BD2)

Tefunt (BD2)

Thestral (BD2)

TinaBelcher (BD2)

Triumph (BD2)

TrvxScott (BD2)

Zainub (BD2)

Alsaber (BD3)

Amela (BD3)

Celery (BD3)

Conan (BD3)

Dexers (BD3)

ElGato (BD3)

Kaine (BD3)

Pavo (BD3)

phiCAM (BD3)

Provolone (BD3)

Saftant (BD3)

Speedwell (BD3)

Vanseggelen (BD3)

Verabelle (BD3)

Verse (BD3)

Yosif (BD3)

BroPlease (BD4)

GreenWeasel (BD4)

phiHau3 (BD4)

StrepC (BD5)

Celia (BD6)

Itza (BD6)

Urza (BD6)

VieEnRose (BD6)

Annotating InstitutionWashington University in St. Louis
Annotation StatusIn GenBank
Plaque NotesPlaques are round and medium in size with cloudy edges and a relatively clear center.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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South40_1

South40_2
(HNH endonuclease)

South40_3

South40_4

South40_5
(thioredoxin)

South40_6
(terminase small subunit)

South40_7
(terminase large subunit)

South40_8
(portal protein)

South40_9

South40_10
(scaffolding protein)

South40_11
(major capsid protein)

South40_12
(head-to-tail adaptor)

South40_13
(head-to-tail stopper)

South40_14

South40_15
(tail terminator)

South40_16
(major tail protein)

South40_17
(tail assembly chaperone)

South40_18
(tail assembly chaperone)

South40_19
(tape measure protein)

South40_20
(minor tail protein)

South40_21
(minor tail protein)

South40_22

South40_23
(minor tail protein)

South40_24
(minor tail protein)

South40_25

South40_26
(endolysin)

South40_27

South40_28
(Lsr2-like DNA bridging protein)

South40_29
(immunity repressor)

South40_30

South40_31
(exonuclease)

South40_32

South40_33

South40_34
(deoxycytidylate deaminase)

South40_35
(DnaB-like dsDNA helicase)

South40_36
(holliday junction resolvase)

South40_37

South40_38
(DNA primase)

South40_39
(DNA primase)

South40_40

South40_41

South40_42
(helix-turn-helix DNA binding domain protein)

South40_43
(nuclease)

South40_44

South40_45
(helix-turn-helix DNA binding domain protein)

South40_46

South40_47
(ribonucleotide reductase)

South40_48
(methyltransferase)

South40_49

South40_50
(serine integrase)

South40_51
(ThyX-like thymidylate synthase)

South40_52

South40_53

South40_54
(DnaE-like DNA polymerase III alpha)

South40_55

South40_56

South40_57

South40_58
(deoxynucleoside monophosphate kinase)

South40_59

South40_60

South40_61

South40_62

South40_63

South40_64
(HNH endonuclease)

South40_65

South40_66
(OCR-like antirestriction protein)

South40_67

South40_68

South40_69

South40_70

South40_71

South40_72
(acetyltransferase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ820091
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload