Streptomyces phage South40
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Detailed Information for Phage South40
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found ByAlison Deng and John Georgiades
Year Found2020
Location FoundSt. Louis, MO United States
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature14°C
GPS Coordinates38.644689 N, 90.314689 W Map
Discovery NotesDate of collection: 09/29/2020
Time of collection: 10:00 AM CDT
Depth below the surface: 8 cm
Notable nearby objects: picnic table, several trees, a walking path, and a dormitory.
Soil moisture: Dry
Soil quality: Sandy
Humidity: 67%
Atmospheric Pressure: 745.7 mmHg
Naming NotesWe decided to name our phage South40 because our soil sample was collected from the forty-acre residential area of our university's campus that we lovingly refer to as the South 40.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 18, 2021
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage187
Genome length (bp)51271
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGGTCAGTGAT
GC Content65.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusBeing Annotated (Expected completion by 5/1/2021)
Plaque NotesPlaques are round and medium in size with cloudy edges and a relatively clear center.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload