Detailed Information for Phage South40 |
Discovery Information |
Isolation Host | Streptomyces lividans JI 1326 |
Found By | Alison Deng and John Georgiades |
Year Found | 2020 |
Location Found | St. Louis, MO United States |
Finding Institution | Washington University in St. Louis |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | No |
Isolation Temperature | 14°C |
GPS Coordinates | 38.644689 N, 90.314689 W Map |
Discovery Notes | Date of collection: 09/29/2020 Time of collection: 10:00 AM CDT Depth below the surface: 8 cm Notable nearby objects: picnic table, several trees, a walking path, and a dormitory. Soil moisture: Dry Soil quality: Sandy Humidity: 67% Atmospheric Pressure: 745.7 mmHg |
Naming Notes | We decided to name our phage South40 because our soil sample was collected from the forty-acre residential area of our university's campus that we lovingly refer to as the South 40. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Feb 18, 2021 |
Sequencing Facility | The McDonnell Genome Institute at Washington University |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 187 |
Genome length (bp) | 51271 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CGGTCAGTGAT |
GC Content | 65.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | BD |
Subcluster | BD1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | Washington University in St. Louis |
Annotation Status | In GenBank |
Plaque Notes | Plaques are round and medium in size with cloudy edges and a relatively clear center. |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
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Submitted Minimal DNA Master File | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MZ820091 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |