Streptomyces phage Urza
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Detailed Information for Phage Urza
Discovery Information
Isolation HostStreptomyces griseofuscus ATCC 23916
Found BySerena Schein and Louis Gordon
Year Found2018
Location FoundSt. Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature32°C
GPS Coordinates38.6452 N, 90.3145 W Map
Discovery NotesThe phage was found in soil full of organic material and mulch. The soil was dug from 0-11cm deep.
Naming NotesUrza is the ultimate planeswalker in Magic: The Gathering. It's like D&D, but nerdier.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 18, 2019
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage239
Genome length (bp)50448
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGCTGCGTCAT
GC Content68.5%
Sequencing NotesA small population of reads in the project (~27%) called an extra C at position 49299, after AG- and before -AA.
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD6
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionWashington University in St. Louis
Annotation StatusIn GenBank
Plaque NotesLarge, circular, clear plaques with a slightly cloudy outer rim.
Has been Phamerated?Yes
Gene List

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Urza_1

Urza_2
(HNH endonuclease)

Urza_4
(phosphoesterase)

Urza_5
(terminase, small subunit)

Urza_6
(terminase, large subunit)

Urza_7
(portal protein)

Urza_8
(minor capsid protein)

Urza_9
(scaffolding protein)

Urza_10
(major capsid protein)

Urza_11
(head-to-tail adaptor)

Urza_12
(head-to-tail stopper)

Urza_13

Urza_14
(tail terminator)

Urza_15
(minor tail protein)

Urza_16
(tail assembly chaperone)

Urza_17
(tail assembly chaperone)

Urza_18
(tape measure protein)

Urza_19
(minor tail protein)

Urza_20
(minor tail protein)

Urza_21

Urza_22

Urza_23
(minor tail protein)

Urza_24
(minor tail protein)

Urza_25

Urza_26
(tail fiber)

Urza_27
(membrane protein)

Urza_28
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Urza_29
(membrane protein)

Urza_30

Urza_31
(immunity repressor)

Urza_32

Urza_33
(exonuclease)

Urza_34

Urza_35

Urza_36

Urza_37
(DNAB-like dsDNA helicase)

Urza_38
(Holliday junction resolvase)

Urza_39

Urza_40
(DNA primase)

Urza_41
(DNA primase)

Urza_42

Urza_43

Urza_44

Urza_45
(metallophosphoesterase)

Urza_46

Urza_47
(helix-turn-helix DNA binding domain)

Urza_48
(Lsr2-like DNA bridging protein)

Urza_49

Urza_50
(serine integrase)

Urza_51

Urza_52

Urza_53
(DnaE-like DNA polymerase III (alpha))

Urza_54
(membrane protein)

Urza_55

Urza_56

Urza_57

Urza_58

Urza_59

Urza_60

Urza_61
(deoxynucleoside monophosphate kinase)

Urza_62

Urza_63
(helix-turn-helix DNA binding domain)

Urza_64

Urza_65

Urza_66

Urza_67

Urza_68

Urza_69

Urza_70

Urza_71

Urza_72

Urza_73
(membrane protein)

Urza_74

Urza_75
(antirestriction protein, OCR-like)

Urza_76

Urza_77

Urza_78

Urza_79

Urza_80
(acetyltransferase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN234189
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload