Streptomyces phage BartholomewSD

BLAST and GeneMark available upon entering GPS coordinates

Know something about this phage that we don't? Modify its data.
Detailed Information for Phage BartholomewSD
Discovery Information
Isolation HostStreptomyces platensis MJ1A1
Found ByQuinn Fujii
Year Found2015
Location FoundLa Jolla, CA USA
Finding InstitutionUniversity of California, San Diego
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS CoordinatesUnavailable
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage3397
Genome length (bp)52131
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGCCACGTCTT
GC Content67.6%
Sequencing Notesabout 50% of the population contain a 1373 bp insert from 49167 - 50540 bp (inclusive)
Fasta file available?Available upon entering GPS coordinates
Characterization
ClusterBD
SubclusterBD2
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of California, San Diego
Annotation StatusIn GenBank
Plaque NotesClear Plaques about 3-5mm in diameter
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

BartholomewSD_1

BartholomewSD_2

BartholomewSD_3
(HNH endonuclease)

BartholomewSD_5

BartholomewSD_6
(thioredoxin)

BartholomewSD_7

BartholomewSD_8
(terminase)

BartholomewSD_9
(portal protein)

BartholomewSD_10
(MuF-like minor capsid protein)

BartholomewSD_11
(scaffolding protein)

BartholomewSD_12
(major capsid protein)

BartholomewSD_13
(head-to-tail adaptor)

BartholomewSD_14
(head-to-tail stopper)

BartholomewSD_15

BartholomewSD_16
(tail terminator)

BartholomewSD_17
(major tail protein)

BartholomewSD_18
(tail assembly chaperone)

BartholomewSD_19
(tail assembly chaperone)

BartholomewSD_20
(tape measure protein)

BartholomewSD_21
(minor tail protein)

BartholomewSD_22
(minor tail protein)

BartholomewSD_23

BartholomewSD_24
(minor tail protein)

BartholomewSD_25

BartholomewSD_26

BartholomewSD_27

BartholomewSD_28
(lysin A)

BartholomewSD_29

BartholomewSD_30

BartholomewSD_31
(immunity repressor)

BartholomewSD_32

BartholomewSD_33
(Cas4 family exonuclease)

BartholomewSD_34

BartholomewSD_35

BartholomewSD_36

BartholomewSD_37
(deoxycytidylate deaminase)

BartholomewSD_38
(DnaB-like helicase)

BartholomewSD_39
(holliday junction resolvase)

BartholomewSD_40

BartholomewSD_41
(DNA primase)

BartholomewSD_42
(DNA primase)

BartholomewSD_43

BartholomewSD_44

BartholomewSD_45

BartholomewSD_46
(Mre11 family dsDNA break repair endo/exonuclease)

BartholomewSD_47

BartholomewSD_48
(helix-turn-helix DNA binding protein)

BartholomewSD_49

BartholomewSD_50
(ribonucleotide reductase)

BartholomewSD_51

BartholomewSD_52

BartholomewSD_53

BartholomewSD_54

BartholomewSD_55
(helix-turn-helix DNA binding protein)

BartholomewSD_56
(integrase)

BartholomewSD_57

BartholomewSD_58
(ThyX-like thymidylate synthase)

BartholomewSD_59

BartholomewSD_60

BartholomewSD_61

BartholomewSD_62

BartholomewSD_63

BartholomewSD_64

BartholomewSD_65
(deoxymononucleoside kinase)

BartholomewSD_66

BartholomewSD_67

BartholomewSD_68

BartholomewSD_69

BartholomewSD_70

BartholomewSD_71

BartholomewSD_72

BartholomewSD_73

BartholomewSD_74

BartholomewSD_75

BartholomewSD_76

BartholomewSD_77

BartholomewSD_78

BartholomewSD_79

BartholomewSD_80

BartholomewSD_81

BartholomewSD_82

BartholomewSD_83

BartholomewSD_84

BartholomewSD_85

BartholomewSD_86

BartholomewSD_87

BartholomewSD_88

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK460245
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
SEA Lysate Titer 1.5*10^10 PFU/mL
Available Files
GenBank File for PhameratorDownload