Streptomyces phage RedBear
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Detailed Information for Phage RedBear
Discovery Information
Isolation HostStreptomyces lividans JI 1326
Found BySimon Dawson and Martin Dalling
Year Found2019
Location FoundSt. Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature28°C
GPS Coordinates38.6451 N, 90.2978 W Map
Discovery NotesThe phage was isolated from soil taken 6 centimeters below the surface. The soil was moist and full of organic material.
Naming NotesThe name comes from Simon Dawson's nickname for his little brother: Jonah Dawson. It is also named after the iconic WashU bear.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJun 15, 2020
Sequencing FacilityThe McDonnell Genome Institute at Washington University
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage92
Genome length (bp)51271
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGGTCAGTGAT
GC Content65.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD1
Cluster Life CycleTemperate
Other Cluster Members

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Aaronocolus (BD1)

Asten (BD1)

BarryBee (BD1)

BeardedLady (BD1)

Bovely (BD1)

Brataylor (BD1)

BryanRecycles (BD1)

Caliburn (BD1)

Celeste (BD1)

Chucky (BD1)

Danzina (BD1)

Dattran (BD1)

Dwayne (BD1)

Eddasa (BD1)

Ejemplo (BD1)

Emaanora (BD1)

EnochSoames (BD1)

Esperer (BD1)

Goby (BD1)

Godpower (BD1)

Hippo (BD1)

Hydra (BD1)

Indigo (BD1)

Izzy (BD1)

Jash (BD1)

Katalie (BD1)

Lannister (BD1)

Legacy (BD1)

Leviticus (BD1)

Lika (BD1)

Lorelei (BD1)

Maneekul (BD1)

Nabi (BD1)

Nanodon (BD1)

Nerdos (BD1)

Oliynyk (BD1)

Ozzie (BD1)

OzzyJ (BD1)

Phettuccine (BD1)

Rana (BD1)

RedBear (BD1)

Rusticus (BD1)

SarahRose (BD1)

Snorlax (BD1)

South40 (BD1)

Sujidade (BD1)

SunsetPointe (BD1)

TagePhighter (BD1)

Toma (BD1)

Triste (BD1)

TuanPN (BD1)

Unstoppable (BD1)

Werner (BD1)

Whatever (BD1)

Yasdnil (BD1)

Zemlya (BD1)

Alvy (BD2)

Amethyst (BD2)

Andris (BD2)

Animus (BD2)

BartholomewSD (BD2)

Bowden (BD2)

Caelum (BD2)

Daudau (BD2)

Diane (BD2)

ELB20 (BD2)

GirlDinner (BD2)

Haizum (BD2)

Hank144 (BD2)

Issmi (BD2)

Janus (BD2)

Jevington (BD2)

Loofah (BD2)

Marav (BD2)

Nishikigoi (BD2)

Omar (BD2)

Pablito (BD2)

Paedore (BD2)

Paolo (BD2)

Puginator (BD2)

R4 (BD2)

SqueakyClean (BD2)

Superstar (BD2)

Tefunt (BD2)

Thestral (BD2)

TinaBelcher (BD2)

Triumph (BD2)

TrvxScott (BD2)

Zainub (BD2)

Alsaber (BD3)

Amela (BD3)

Celery (BD3)

Conan (BD3)

Dexers (BD3)

ElGato (BD3)

Kaine (BD3)

Pavo (BD3)

phiCAM (BD3)

Provolone (BD3)

Saftant (BD3)

Speedwell (BD3)

Vanseggelen (BD3)

Verabelle (BD3)

Verse (BD3)

Yosif (BD3)

BroPlease (BD4)

GreenWeasel (BD4)

phiHau3 (BD4)

StrepC (BD5)

Celia (BD6)

Itza (BD6)

Urza (BD6)

VieEnRose (BD6)

Annotating InstitutionWashington University in St. Louis
Annotation StatusIn GenBank
Plaque NotesOur phage's plaques are large and round with fuzzy edges. Inside of the plaque, it is completely clear.
Has been Phamerated?Yes
Gene List

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RedBear_1

RedBear_2

RedBear_3
(HNH endonuclease)

RedBear_4

RedBear_5

RedBear_6
(thioredoxin)

RedBear_7
(terminase small subunit)

RedBear_8
(terminase large subunit)

RedBear_9
(portal protein)

RedBear_10

RedBear_11
(scaffolding protein)

RedBear_12
(major capsid protein)

RedBear_13
(head-to-tail adaptor)

RedBear_14
(head-to-tail stopper)

RedBear_15

RedBear_16
(tail terminator)

RedBear_17
(major tail protein)

RedBear_18
(tail assembly chaperone)

RedBear_19
(tail assembly chaperone)

RedBear_20
(tape measure protein)

RedBear_21
(minor tail protein)

RedBear_22
(minor tail protein)

RedBear_23

RedBear_24
(minor tail protein)

RedBear_25
(minor tail protein)

RedBear_26

RedBear_27
(endolysin)

RedBear_28

RedBear_29

RedBear_30
(immunity repressor)

RedBear_31

RedBear_32
(exonuclease)

RedBear_33

RedBear_34

RedBear_35
(deoxycytidylate deaminase)

RedBear_36
(DnaB-like dsDNA helicase)

RedBear_37
(holliday junction resolvase)

RedBear_38

RedBear_39
(DNA primase)

RedBear_40
(DNA primase)

RedBear_41

RedBear_42

RedBear_43
(helix-turn-helix DNA binding domain protein)

RedBear_44
(nuclease)

RedBear_45

RedBear_46
(helix-turn-helix DNA binding domain protein)

RedBear_47

RedBear_48
(ribonucleotide reductase)

RedBear_49
(methyltransferase)

RedBear_50

RedBear_51
(serine integrase)

RedBear_52
(ThyX-like thymidylate synthase)

RedBear_53

RedBear_54

RedBear_55
(DnaE-like DNA polymerase III)

RedBear_56

RedBear_57

RedBear_58

RedBear_59
(deoxynucleoside monophosphate kinase)

RedBear_60

RedBear_61

RedBear_62

RedBear_63

RedBear_64

RedBear_65
(HNH endonuclease)

RedBear_66

RedBear_67
(OCR-like antirestriction protein)

RedBear_68

RedBear_69

RedBear_70

RedBear_71

RedBear_72

RedBear_73
(acetyltransferase)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ648039
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload