Streptomyces phage TrvxScott
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Detailed Information for Phage TrvxScott
Discovery Information
Isolation HostStreptomyces platensis MJ1A1
Former namesTraviss
Found ByKian Falah
Year Found2015
Location FoundLa Jolla , CA USA
Finding InstitutionUniversity of California, San Diego
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates32.882778 N, 117.243333 W Map
Discovery NotesSoil patch over grass
Damp, warm soil with some water remaining towards the bottom of it (approximately 10 cm deep)
Naming NotesAfter musician Travi$ Scott
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 16, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1632
Genome length (bp)52600
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGCCACGTCTT
GC Content67.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterBD
SubclusterBD2
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of California, San Diego
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

TrvxScott_1

TrvxScott_2
(HNH endonuclease)

TrvxScott_3
(thioredoxin)

TrvxScott_4
(terminase small subunit)

TrvxScott_5
(terminase large subunit)

TrvxScott_6
(portal protein)

TrvxScott_7
(capsid maturation protease)

TrvxScott_8
(scaffolding protein)

TrvxScott_9
(major capsid protein)

TrvxScott_10
(head-to-tail connector complex protein)

TrvxScott_11
(head-to-tail connector complex protein)

TrvxScott_12

TrvxScott_13
(head-to-tail connector complex protein)

TrvxScott_14
(major tail protein)

TrvxScott_15
(tail assembly chaperone)

TrvxScott_16
(tail assembly chaperone)

TrvxScott_17
(tape measure protein)

TrvxScott_18
(minor tail protein)

TrvxScott_19
(minor tail protein)

TrvxScott_20

TrvxScott_21

TrvxScott_22

TrvxScott_23
(minor tail protein)

TrvxScott_24

TrvxScott_25
(lysin A)

TrvxScott_26

TrvxScott_27

TrvxScott_28

TrvxScott_29

TrvxScott_30
(exonuclease)

TrvxScott_31

TrvxScott_32

TrvxScott_33

TrvxScott_34
(deoxycytidylate deaminase)

TrvxScott_35
(DNA helicase)

TrvxScott_36
(holliday junction resolvase)

TrvxScott_37

TrvxScott_38
(DNA primase)

TrvxScott_39
(DNA primase)

TrvxScott_40

TrvxScott_41

TrvxScott_42
(exonuclease)

TrvxScott_43

TrvxScott_44
(HTH DNA binding protein)

TrvxScott_45

TrvxScott_46
(ribonucleotide reductase)

TrvxScott_47
(DNA methylase)

TrvxScott_48

TrvxScott_49

TrvxScott_50

TrvxScott_51
(HTH DNA binding protein)

TrvxScott_52
(integrase)

TrvxScott_53

TrvxScott_54
(thymidylate synthase)

TrvxScott_55

TrvxScott_56

TrvxScott_57

TrvxScott_58

TrvxScott_59

TrvxScott_60

TrvxScott_61
(deoxynucleoside monophosphate kinase)

TrvxScott_62

TrvxScott_63

TrvxScott_64

TrvxScott_65

TrvxScott_66

TrvxScott_67

TrvxScott_68

TrvxScott_69

TrvxScott_70

TrvxScott_71

TrvxScott_72

TrvxScott_73

TrvxScott_74

TrvxScott_75

TrvxScott_76

TrvxScott_77

TrvxScott_78
(acetyltransferase)

TrvxScott_79

TrvxScott_80

TrvxScott_81

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH669016
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
GenBank File for PhameratorDownload