Gordonia phage Squibbles
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Squibbles
Discovery Information
Isolation HostGordonia terrae CAG3
Found ByJared Welton
Year Found2023
Location FoundAffton, MO USA
Finding InstitutionSt. Louis Community College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature25°C
GPS Coordinates38.562954 N, 90.336606 W Map
Discovery NotesMulch bed in a backyard with juniper trees. has an underground fresh water drain. has standing water for periods of time after rain.
Naming NotesRandom name made up
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 18, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage1288
Genome length (bp)76595
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length191 bp
GC Content58.9%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS2
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionSt. Louis Community College
Annotation StatusIn GenBank
Number of Genes106
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Squibbles_1

Squibbles_2

Squibbles_3

Squibbles_4
(DNA helicase)

Squibbles_5

Squibbles_6

Squibbles_7

Squibbles_8
(DNA primase)

Squibbles_9

Squibbles_10
(terminase)

Squibbles_11
(portal protein)

Squibbles_12
(minor tail protein)

Squibbles_13

Squibbles_14
(capsid maturation protease)

Squibbles_15
(capsid decoration protein)

Squibbles_16
(major capsid protein)

Squibbles_17

Squibbles_18

Squibbles_19
(head-to-tail adaptor)

Squibbles_20

Squibbles_21

Squibbles_22

Squibbles_23
(major tail protein)

Squibbles_24 — tRNA
(tRNA-Asn(gtt))

Squibbles_25
(tail assembly chaperone)

Squibbles_26
(tail assembly chaperone)

Squibbles_27
(tape measure protein)

Squibbles_28
(minor tail protein)

Squibbles_29
(minor tail protein)

Squibbles_30
(minor tail protein)

Squibbles_31

Squibbles_32

Squibbles_33

Squibbles_34
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Squibbles_35
(lysin A, protease M23 domain)

Squibbles_36

Squibbles_37

Squibbles_38

Squibbles_39

Squibbles_40
(Cas4 exonuclease)

Squibbles_41

Squibbles_42

Squibbles_43

Squibbles_44

Squibbles_45

Squibbles_46
(DNA methyltransferase)

Squibbles_47

Squibbles_48

Squibbles_49
(lysin B)

Squibbles_50
(MazG-like nucleotide pyrophosphohydrolase)

Squibbles_51

Squibbles_52

Squibbles_53

Squibbles_54
(DNA polymerase III sliding clamp (Beta))

Squibbles_55
(DnaQ-like (DNA polymerase III subunit))

Squibbles_56
(DNA binding protein)

Squibbles_57

Squibbles_58
(DNA helicase)

Squibbles_59

Squibbles_60

Squibbles_61

Squibbles_62
(DNA binding protein)

Squibbles_63

Squibbles_64

Squibbles_65

Squibbles_66

Squibbles_67

Squibbles_68

Squibbles_69

Squibbles_70

Squibbles_71

Squibbles_72

Squibbles_73

Squibbles_74

Squibbles_75

Squibbles_76

Squibbles_77

Squibbles_78

Squibbles_79

Squibbles_80

Squibbles_81

Squibbles_82

Squibbles_83
(HNH endonuclease)

Squibbles_84

Squibbles_85

Squibbles_86

Squibbles_87

Squibbles_88
(CobT-like cobalamin biosynthesis protein)

Squibbles_89
(AAA-ATPase)

Squibbles_90

Squibbles_91

Squibbles_92

Squibbles_93

Squibbles_94

Squibbles_95

Squibbles_96

Squibbles_97

Squibbles_98

Squibbles_99

Squibbles_100

Squibbles_101

Squibbles_102

Squibbles_103

Squibbles_104

Squibbles_105

Squibbles_106

Squibbles_107

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionPX071742
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 174
Pitt Freezer Box Grid# A2
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload