| Detailed Information for Phage Tredge |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Aaron Zheng |
| Year Found | 2017 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Unknown |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.443884 N, 79.957642 W Map |
| Discovery Notes | I found this sample from right behind Benedum off of Thackeray Ave at the coordinates N 40° 26' 37.9824" W 79° 57' 27.5112''. The weather was yet again very nice at around 50 degrees Farenheit. It had not rained at all on this day, and it had not snowed in a long time. The weather was still abnormally warm. This sample was also located in an area with a lot of dead grasses and some bushes. I hope this large amount of vegetation could show a higher chance of success on this sample.
This information is from Dylan Falk, the person I adopted the soil sample from. |
| Naming Notes | Online ID of one of my friends. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | May 17, 2017 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1255 |
| Genome length (bp) | 75345 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 1173 bp |
| GC Content | 59.6% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CS |
| Subcluster | CS4 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | University of Wisconsin-River Falls |
| Annotation Status | In GenBank |
| Plaque Notes | 0.5mm to 1mm plaques that are small and circular. Plaques are clear all the way through |
| Number of Genes | 99 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Minimal DNA Master File | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MK494098 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
56 |
| Pitt Freezer Box Grid# |
F6 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| GenBank File for Phamerator | Download |
