| Detailed Information for Phage Anamika |
| Discovery Information |
| Isolation Host | Gordonia terrae 3612 |
| Found By | Anjna Nair |
| Year Found | 2016 |
| Location Found | Pittsburgh , PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | No |
| Isolation Temperature | 30°C |
| GPS Coordinates | 40.44556 N, 79.96278 W Map |
| Discovery Notes | I found this phage in a direct isolation of a soil sample from Sutherland West. Soil was collected at an elevation of 1120 ft and at coordinates 40º26'44"N 79º57'46"W. The surrounding environment around the location grassy, however the soil was collected in an area devoid of grass. Soil was collected in a hot and humid environment. Soil was slightly moist but mostly dry since the past 24 hours have been hot with a temperature around 30-32 ºC. The ambient temperature around was around 30 ºC. |
| Naming Notes | Anamika is a Sanskrit word meaning "person without name" |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Dec 15, 2016 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 907 |
| Genome length (bp) | 73851 |
| Character of genome ends | Direct Terminal Repeat |
| Direct Terminal Repeat Length | 151 bp |
| GC Content | 59.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | CS |
| Subcluster | CS3 |
| Cluster Life Cycle | Lytic |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | The plaques formed from this phage are clear, round and very small. The size of the plaques are around 0.5 mm. |
| Morphotype | Siphoviridae |
| Number of Genes | 92 |
| Number of tRNAs | 1 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MG099935 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
42 |
| Pitt Freezer Box Grid# |
B2 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |
