| Detailed Information for Phage Berrie |
| Discovery Information |
| Isolation Host | Arthrobacter globiformis B-2979 |
| Found By | Daria Di Blasi |
| Year Found | 2021 |
| Location Found | Los Angeles, CA USA |
| Finding Institution | University of California, Los Angeles |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 30°C |
| GPS Coordinates | 34.020221 N, 118.382866 W Map |
| Discovery Notes | Very dry, fine, and rocky soil taken from a depth of 16cm. Air temperature was 21.7 C.
AL Quarter and Lab section: F21-1A
Instructor: Amanda Freise; Ana Garcia Vedrenne
Teaching Assistant: Dominic Garza
Undergraduate Assistant(s): Jennifer Nguyen
Team Name: Phage Pham
Team Members: Valeria Chavez, Celine Cheng, Evan Cosentino, Alicia Gibbons |
| Naming Notes | We were in a strawberry lipstick state of mind. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 13, 2022 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Sequencer Used | Illumina MiSeq |
| Read Type | Single-end reads |
| Read Length | 150 bp |
| Approximate Shotgun Coverage | 1524 |
| Genome length (bp) | 43804 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 11 bases |
| Overhang Sequence | CGAAGGGGCAT |
| GC Content | 66.8% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | AZ |
| Subcluster | AZ1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | University of California, Los Angeles |
| Annotation Status | In GenBank |
| Plaque Notes | Turbid plaques with diameter ranging from 2-3mm |
| Morphotype | Siphoviridae |
| Number of Genes | 69 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Submitted Annotation in DNA Master Format | Download |
| Submitted Minimal DNA Master File | Download |
| Author List | Download |
| Annotation Cover Sheet | Download |
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | PP208921 |
| Refseq Number | None yet |
| Archiving Info |
| Archiving status |
Archived |
| Pitt Freezer Box# |
139 |
| Pitt Freezer Box Grid# |
F6 |
| Available Files |
| Plaque Picture | Download |
| GenBank File for Phamerator | Download |
