Mycobacterium phage FirstPlacePfu
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Detailed Information for Phage FirstPlacePfu
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByNnamdi Ihejirika
Year Found2014
Location FoundLincoln University, PA USA
Finding InstitutionLincoln University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates39.805953 N, 75.926614 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 6, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage472
Genome length (bp)45680
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceCCCGCCCCCCGA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterP
SubclusterP1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionNyack College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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FirstPlacePfu_1
(terminase small subunit)

FirstPlacePfu_2
(terminase large subunit)

FirstPlacePfu_3
(portal protein)

FirstPlacePfu_4
(capsid maturation protease)

FirstPlacePfu_5
(scaffolding protein)

FirstPlacePfu_6
(major capsid protein)

FirstPlacePfu_7

FirstPlacePfu_8
(head-to-tail adaptor)

FirstPlacePfu_9
(head-to-tail stopper)

FirstPlacePfu_10

FirstPlacePfu_11

FirstPlacePfu_12

FirstPlacePfu_13
(tail terminator)

FirstPlacePfu_14
(major tail protein)

FirstPlacePfu_15
(tail assembly chaperone)

FirstPlacePfu_16
(tail assembly chaperone)

FirstPlacePfu_17
(tape measure protein)

FirstPlacePfu_18
(minor tail protein)

FirstPlacePfu_19
(minor tail protein)

FirstPlacePfu_20
(minor tail protein)

FirstPlacePfu_21
(minor tail protein)

FirstPlacePfu_22
(minor tail protein)

FirstPlacePfu_23

FirstPlacePfu_24

FirstPlacePfu_25

FirstPlacePfu_26
(lysin A)

FirstPlacePfu_27
(lysin B)

FirstPlacePfu_28
(holin)

FirstPlacePfu_29

FirstPlacePfu_30
(integrase)

FirstPlacePfu_31
(immunity repressor)

FirstPlacePfu_32
(MerR-like helix-turn-helix DNA binding domain protein)

FirstPlacePfu_33

FirstPlacePfu_34
(antirepressor)

FirstPlacePfu_35

FirstPlacePfu_36

FirstPlacePfu_37

FirstPlacePfu_38

FirstPlacePfu_39

FirstPlacePfu_40

FirstPlacePfu_41

FirstPlacePfu_42

FirstPlacePfu_43

FirstPlacePfu_44

FirstPlacePfu_45

FirstPlacePfu_46
(RecE-like exonuclease)

FirstPlacePfu_47
(RecT-like ssDNA binding protein)

FirstPlacePfu_48

FirstPlacePfu_49
(FtsK-like DNA translocase)

FirstPlacePfu_50
(RusA-like resolvase)

FirstPlacePfu_51

FirstPlacePfu_52

FirstPlacePfu_53

FirstPlacePfu_54

FirstPlacePfu_55

FirstPlacePfu_56

FirstPlacePfu_57
(helix-turn-helix DNA binding domain protein)

FirstPlacePfu_58

FirstPlacePfu_59

FirstPlacePfu_60

FirstPlacePfu_61

FirstPlacePfu_62

FirstPlacePfu_63
(HNH endonuclease)

FirstPlacePfu_64

FirstPlacePfu_65

FirstPlacePfu_66
(helix-turn-helix DNA binding domain protein)

FirstPlacePfu_67

FirstPlacePfu_68

FirstPlacePfu_69
(helix-turn-helix DNA binding domain protein)

FirstPlacePfu_70

FirstPlacePfu_71

FirstPlacePfu_72

FirstPlacePfu_73

FirstPlacePfu_74

FirstPlacePfu_75
(ribbon-helix-helix DNA binding domain protein)

FirstPlacePfu_76

FirstPlacePfu_77

FirstPlacePfu_78

FirstPlacePfu_79

FirstPlacePfu_80

FirstPlacePfu_81

FirstPlacePfu_82
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK814758
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 11
Pitt Freezer Box Grid# G5
Available Files
EM PictureDownload
GenBank File for PhameratorDownload