Detailed Information for Phage Vidya |
Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Found By | Serena Slatas |
Year Found | 2023 |
Location Found | State College, PA USA |
Finding Institution | University of Pittsburgh |
Program | Phage Hunters Integrating Research and Education |
From enriched soil sample? | Yes |
Isolation Temperature | 37°C |
GPS Coordinates | 40.79777 N, 77.86113 W Map |
Discovery Notes | This phage is from the campus of Penn State University outside the HUB. I collected the dirt on 10/21/23. |
Naming Notes | This phage is named after my friend who was with me when collecting the dirt. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 30, 2024 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 602 |
Genome length (bp) | 46502 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 12 bases |
Overhang Sequence | CCCGCCCCCCGA |
GC Content | 67.2% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | P |
Subcluster | P1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | University of Pittsburgh |
Annotation Status | Being Annotated (Expected completion by 5/1/2024) |
Morphotype | Siphoviridae |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |