Mycobacterium phage Phineas
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Detailed Information for Phage Phineas
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByEric Hederstedt
Year Found2011
Location FoundHolland, MI USA
Finding InstitutionHope College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates42.787639 N, 86.104326 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 28, 2012
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIon Torrent Sequencing
Approximate Shotgun Coverage149
Sanger Finishing Reactions8
Genome length (bp)47229
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceCCCGCCCCCCGA
GC Content67.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterP
SubclusterP1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionNorthwestern College
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Phineas_1
(terminase small subunit)

Phineas_2
(terminase large subunit)

Phineas_3
(portal protein)

Phineas_4
(capsid maturation protease)

Phineas_5
(scaffolding protein)

Phineas_6
(major capsid protein)

Phineas_7

Phineas_8
(head-to-tail adaptor)

Phineas_9
(head-to-tail stopper)

Phineas_10

Phineas_11

Phineas_12

Phineas_13
(tail terminator)

Phineas_14
(major tail protein)

Phineas_15
(tail assembly chaperone)

Phineas_16
(tail assembly chaperone)

Phineas_17
(tape measure protein)

Phineas_18
(minor tail protein)

Phineas_19
(minor tail protein)

Phineas_20
(minor tail protein)

Phineas_21
(minor tail protein)

Phineas_22
(minor tail protein)

Phineas_23

Phineas_24

Phineas_25

Phineas_26
(lysin A)

Phineas_27
(lysin B)

Phineas_28

Phineas_29
(membrane protein)

Phineas_30
(integrase)

Phineas_31
(immunity repressor)

Phineas_32
(excise)

Phineas_33

Phineas_34
(antirepressor)

Phineas_35

Phineas_36

Phineas_37

Phineas_38

Phineas_39

Phineas_40

Phineas_41

Phineas_42

Phineas_43

Phineas_44

Phineas_45
(HNH endonuclease)

Phineas_46

Phineas_47
(RecE-like exonuclease)

Phineas_48
(RecT-like ssDNA binding protein)

Phineas_49

Phineas_50

Phineas_51
(FtsK-like DNA translocase)

Phineas_52
(RusA-like resolvase)

Phineas_53

Phineas_54

Phineas_55
(DNA methylase)

Phineas_56

Phineas_57
(DNA methylase)

Phineas_58
(DNA methylase)

Phineas_59
(helix-turn-helix DNA binding domain protein)

Phineas_60

Phineas_61

Phineas_62

Phineas_63

Phineas_64

Phineas_65

Phineas_66
(MerR-like helix-turn-helix DNA binding domain protein)

Phineas_67

Phineas_68

Phineas_69

Phineas_70
(peptidase)

Phineas_71

Phineas_72

Phineas_73

Phineas_74

Phineas_75

Phineas_76

Phineas_77
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK820639
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload