Mycobacterium phage Phalm
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Detailed Information for Phage Phalm
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByLogan Parish, Alyssa Abrams, Makenna Schultz
Year Found2018
Location FoundLongview, TX USA
Finding InstitutionLeTourneau University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature21°C
GPS Coordinates32.466944 N, 94.730278 W Map
Discovery NotesThe soil sample was obtained from a well-mulched flowerbed. Dug a two inches deep hole into the ground, through the mulch, before collecting the sample, using a plastic spoon. The ground was relatively moist, covered by leaves.
Naming NotesPh stands for the beginning of Phage and ALM stands for our initials A for Alyssa, L for Logan, and M for Makenna.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 7, 2019
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage523
Genome length (bp)48213
Character of genome ends3' Sticky Overhang
Overhang Length13 bases
Overhang SequenceCCTGCCGCCCCGA
GC Content67.3%
Fasta file available?Yes: Download fasta file
Characterization
ClusterP
SubclusterP1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionLeTourneau University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Phalm_1
(terminase small subunit)

Phalm_2
(terminase large subunit)

Phalm_3
(portal protein)

Phalm_4
(capsid maturation protease)

Phalm_5
(scaffolding protein)

Phalm_6
(major capsid protein)

Phalm_7

Phalm_8
(head-to-tail adaptor)

Phalm_9
(head-to-tail stopper)

Phalm_10

Phalm_11

Phalm_12

Phalm_13
(tail terminator)

Phalm_14
(major tail protein)

Phalm_15
(tail assembly chaperone)

Phalm_16
(tail assembly chaperone)

Phalm_17
(tape measure protein)

Phalm_18
(minor tail protein)

Phalm_19
(minor tail protein)

Phalm_20
(minor tail protein)

Phalm_21
(minor tail protein)

Phalm_22
(minor tail protein)

Phalm_23

Phalm_24

Phalm_25
(membrane protein)

Phalm_26
(lysin A)

Phalm_27
(lysin B)

Phalm_28

Phalm_29
(membrane protein)

Phalm_30
(tyrosine integrase)

Phalm_31
(immunity repressor)

Phalm_32
(excise)

Phalm_33

Phalm_34
(antirepressor)

Phalm_35

Phalm_36
(membrane protein)

Phalm_37

Phalm_38

Phalm_39

Phalm_40

Phalm_41

Phalm_42

Phalm_43

Phalm_44

Phalm_45
(RecE-like exonuclease)

Phalm_46
(RecT-like ssDNA binding protein)

Phalm_47

Phalm_48

Phalm_49
(FtsK-like DNA translocase)

Phalm_50
(RusA-like resolvase)

Phalm_51

Phalm_52

Phalm_53
(DNA methylase)

Phalm_54

Phalm_55
(DNA methylase)

Phalm_56

Phalm_57
(helix-turn-helix DNA binding domain protein)

Phalm_58

Phalm_59

Phalm_60
(HNH endonuclease)

Phalm_61

Phalm_62

Phalm_63
(helix-turn-helix DNA binding domain protein)

Phalm_64
(DnaC-like helicase loader)

Phalm_65

Phalm_66
(helix-turn-helix DNA binding protein)

Phalm_67

Phalm_68

Phalm_69
(membrane protein)

Phalm_70

Phalm_71

Phalm_72

Phalm_73

Phalm_74

Phalm_75
(ribbon-helix-helix DNA binding domain protein)

Phalm_76

Phalm_77

Phalm_78

Phalm_79
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN807248
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 85
Pitt Freezer Box Grid# C11
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload