| Detailed Information for Phage Glaske | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Ashley Burdine |
| Year Found | 2017 |
| Location Found | Longview, TX USA |
| Finding Institution | LeTourneau University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | 27°C |
| GPS Coordinates | 32.46555 N, 94.72777 W Map |
| Discovery Notes | My sample was taken by a tree in Longview, Texas from LeTourneau University on August 29, 2017 around 8:15 a.m. The soil was still a little damp from it being the morning. The tree had many protruding roots coming out of the ground covering the nearby soil. I dug in between these roots, right next to the tree. The soil was in the middle of patches of moss, but the soil I collected contained no moss. The soil was also pretty sandy in nature, but was a little thicker as I dug. It was also rocky, with little rocks covering the soil that I collected. I only dug down an inch or two at most when collecting my soil. My sample came from the upper surfaces of the ground. As I mentioned before, the soil sample I collected was a little thicker and damper, than the surface soil which was more sandy and rocky. |
| Naming Notes | I named this phage from the street name that I found it on. The tree that I collected my soil near, is located at the corner by our science lab building. The building that our science lab is located in is named Glaske. The street name that this tree is on is also named Glaske. Therefore, using these two criteria, I named by phage Glaske. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 3, 2018 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 1965 |
| Genome length (bp) | 48222 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 13 bases |
| Overhang Sequence | CCTGCCGCCCCGA |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | P |
| Subcluster | P1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewArib1 (P1) Atcoo (P1) Bartholomew (P1) Bogie (P1) Brusacoram (P1) Bunnies (P1) CactusJack (P1) Camster (P1) Donovan (P1) Dynamo (P1) FirstPlacePfu (P1) Fishburne (P1) Glaske (P1) GreaseLightnin (P1) HUHilltop (P1) Jebeks (P1) Jung (P1) Juniormint (P1) Kari (P1) KilKor (P1) Ksquared (P1) Langerak (P1) Majeke (P1) Malithi (P1) Mangethe (P1) Megiddo (P1) Necropolis (P1) Phalm (P1) Phegasus (P1) Phineas (P1) Polkaroo (P1) Pygmy (P1) Shipwreck (P1) Sonah (P1) StevieRay (P1) StressBall (P1) Techage (P1) Thespis (P1) Venti (P1) Vidya (P1) Willsammy (P1) Zilizebeth (P1) Tortellini (P2) Xavia (P3) BigNuz (P4) Nazo (P4) Phayonce (P5) ThulaThula (P5) Purky (P6) |
| Annotating Institution | LeTourneau University |
| Annotation Status | In GenBank |
| Morphotype | Siphoviridae |
| Number of Genes | 78 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewGlaske_1 Glaske_2 Glaske_3 Glaske_4 Glaske_5 Glaske_6 Glaske_7 Glaske_8 Glaske_9 Glaske_10 Glaske_11 Glaske_12 Glaske_13 Glaske_14 Glaske_15 Glaske_16 Glaske_17 Glaske_18 Glaske_19 Glaske_20 Glaske_21 Glaske_22 Glaske_23 Glaske_24 Glaske_25 Glaske_26 Glaske_27 Glaske_28 Glaske_29 Glaske_30 Glaske_31 Glaske_32 Glaske_33 Glaske_34 Glaske_35 Glaske_36 Glaske_37 Glaske_38 Glaske_39 Glaske_40 Glaske_41 Glaske_42 Glaske_43 Glaske_44 Glaske_45 Glaske_46 Glaske_47 Glaske_48 Glaske_49 Glaske_50 Glaske_51 Glaske_52 Glaske_53 Glaske_54 Glaske_55 Glaske_56 Glaske_57 Glaske_58 Glaske_59 Glaske_60 Glaske_61 Glaske_62 Glaske_63 Glaske_64 Glaske_65 Glaske_66 Glaske_67 Glaske_68 Glaske_69 Glaske_70 Glaske_71 Glaske_72 Glaske_73 Glaske_74 Glaske_75 Glaske_76 Glaske_77 Glaske_78 |
| Submitted Minimal DNA Master File | Download |
| Publication Info | |
| Uploaded to GenBank? | Yes |
| GenBank Accession | MN807250 |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Archived |
| Pitt Freezer Box# | 59 |
| Pitt Freezer Box Grid# | B4 |
| Available Files | |
| Plaque Picture | Download |
| EM Picture | Download |
| GenBank File for Phamerator | Download |