Discovery Information |
Isolation Host | Arthrobacter sulfureus ATCC 19098 |
Found By | Ashlynn Chen |
Year Found | 2025 |
Location Found | Los Angeles, CA USA |
Finding Institution | University of California, Los Angeles |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 34.09899 N, 118.38857 W Map |
Discovery Notes | Instructor: Dr. Daniel Velez Ramirez Teaching Assistant: Alexandra (Ally) Aves Undergraduate Assistant(s): Usha + Pranava Team #1 Name: Philet Mignon Team #1 Members: Catie Cable, Ashlynn Chen, Alyson Chou, Ryan Thompson
Sample description: In the shrubs, by some roots, side slope off side of the road in a very exclusive neighborhood where very exclusive residents reside Depth from which sample was taken (in inches or cm): 8cm deep Air temperature if sample collected outdoors (in degrees Celsius): 14.44℃ |
Naming Notes | named after John Wick, but thicker So thick it clogged 3 filters during the filtration step |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jul 21, 2025 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Sequencer Used | Illumina NextSeq 1000 |
Read Type | Paired-end reads |
Read Length | 300 bp |
Approximate Shotgun Coverage | 8888 |
Genome length (bp) | 43313 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CGAAGCGGCAT |
GC Content | 67.2% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | AZ |
Subcluster | AZ4 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
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Annotating Institution | University of California, Los Angeles |
Annotation Status | Being Annotated (Expected completion by 1/21/2026) |
Plaque Notes | clear throughout, crisp edges, no turbidity or halos Clear, circular, smooth margins, 1-2mm in diameter, through later iterations presented as bullseye of around 1mm diameter 2.1x2.2 mm |
Morphotype | Siphoviridae |
Number of Genes | 69 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Publication Info |
Uploaded to GenBank? | No |
GenBank Accession | None yet |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Not in Pitt Archives |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |