Mycobacterium phage Vidya
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Detailed Information for Phage Vidya
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found BySerena Slatas
Year Found2023
Location FoundState College, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramPhage Hunters Integrating Research and Education
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates40.79777 N, 77.86113 W Map
Discovery NotesThis phage is from the campus of Penn State University outside the HUB. I collected the dirt on 10/21/23.
Naming NotesThis phage is named after my friend who was with me when collecting the dirt.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 30, 2024
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage602
Genome length (bp)46502
Character of genome ends3' Sticky Overhang
Overhang Length12 bases
Overhang SequenceCCCGCCCCCCGA
GC Content67.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterP
SubclusterP1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusOverdue (Expected completion by 10/1/2024)
MorphotypeSiphoviridae
Number of Genes76
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload