| Detailed Information for Phage Vidya | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Serena Slatas |
| Year Found | 2023 |
| Location Found | State College, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 40.79777 N, 77.86113 W Map |
| Discovery Notes | This phage is from the campus of Penn State University outside the HUB. I collected the dirt on 10/21/23. |
| Naming Notes | This phage is named after my friend who was with me when collecting the dirt. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 30, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina Sequencing |
| Approximate Shotgun Coverage | 602 |
| Genome length (bp) | 46502 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | CCCGCCCCCCGA |
| GC Content | 67.2% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | P |
| Subcluster | P1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewArib1 (P1) Atcoo (P1) Bartholomew (P1) Bogie (P1) Brusacoram (P1) Bunnies (P1) CactusJack (P1) Camster (P1) Donovan (P1) Dynamo (P1) FirstPlacePfu (P1) Fishburne (P1) Glaske (P1) GreaseLightnin (P1) HUHilltop (P1) Jebeks (P1) Jung (P1) Juniormint (P1) Kari (P1) KilKor (P1) Ksquared (P1) Langerak (P1) Majeke (P1) Malithi (P1) Mangethe (P1) Megiddo (P1) Necropolis (P1) Phalm (P1) Phegasus (P1) Phineas (P1) Polkaroo (P1) Pygmy (P1) Shipwreck (P1) Sonah (P1) StevieRay (P1) StressBall (P1) Techage (P1) Thespis (P1) Venti (P1) Vidya (P1) Willsammy (P1) Zilizebeth (P1) Tortellini (P2) Xavia (P3) BigNuz (P4) Nazo (P4) Phayonce (P5) ThulaThula (P5) Purky (P6) |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Overdue (Expected completion by 10/1/2024) |
| Morphotype | Siphoviridae |
| Number of Genes | 76 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewVidya_1 Vidya_2 Vidya_3 Vidya_4 Vidya_5 Vidya_6 Vidya_7 Vidya_8 Vidya_9 Vidya_10 Vidya_11 Vidya_12 Vidya_13 Vidya_14 Vidya_15 Vidya_16 Vidya_17 Vidya_18 Vidya_19 Vidya_20 Vidya_21 Vidya_22 Vidya_23 Vidya_24 Vidya_25 Vidya_26 Vidya_27 Vidya_28 Vidya_29 Vidya_30 Vidya_31 Vidya_32 Vidya_33 Vidya_34 Vidya_35 Vidya_36 Vidya_37 Vidya_38 Vidya_39 Vidya_40 Vidya_41 Vidya_42 Vidya_43 Vidya_44 Vidya_45 Vidya_46 Vidya_47 Vidya_48 Vidya_49 Vidya_50 Vidya_51 Vidya_52 Vidya_53 Vidya_54 Vidya_55 Vidya_56 Vidya_57 Vidya_58 Vidya_59 Vidya_60 Vidya_61 Vidya_62 Vidya_63 Vidya_64 Vidya_65 Vidya_66 Vidya_67 Vidya_68 Vidya_69 Vidya_70 Vidya_71 Vidya_72 Vidya_73 Vidya_74 Vidya_75 Vidya_76 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |