The Actinobacteriophage Database

Gordonia phage GourdThymes

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Detailed Information for Phage GourdThymes
Discovery Information
Isolation Host	Gordonia terrae 3612
Found By	Srija Konduru
Year Found	2019
Location Found	Hummelstown, PA United States
Finding Institution	University of Pittsburgh
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	No
Isolation Temperature	30°C
GPS Coordinates	40.24 N, 76.72 W Map
Discovery Notes	It has not rained in a while, so the soil was quite dry. Isolated in September, so the leaves were starting to fall and the garden plants were starting to die. Soil was isolated from a garden, surrounded by trees, with pink roses, yellow cucumber, (red, green, and black) chillies, herbs, and tomatoes.
Naming Notes	A pun about the vegetation from the garden where the soil was taken from (cucumbers and herbs).
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 6, 2020
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina Sequencing
Approximate Shotgun Coverage	901
Genome length (bp)	75807
Character of genome ends	Direct Terminal Repeat
Direct Terminal Repeat Length	191 bp
GC Content	58.9%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	CS
Subcluster	CS2
Cluster Life Cycle	Lytic
Other Cluster Members	Click to View Amore2 (CS1) Austin (CS1) GMA7 (CS1) GTE7 (CS1) HayZem (CS1) Adgers (CS2) Barbochs (CS2) Beaver (CS2) BenoitCattle (CS2) BigShaq (CS2) BirksAndSocks (CS2) Boneham (CS2) Breezic (CS2) Butterball (CS2) CathyBurgh (CS2) Chelms (CS2) CinnamonToast (CS2) Dakiti (CS2) Diabla (CS2) Eggsie (CS2) Ekhein (CS2) Exiguo (CS2) FelixAlejandro (CS2) Flakey (CS2) Gorko (CS2) GourdThymes (CS2) Hotorobo (CS2) Jellybones (CS2) John316 (CS2) Linetti (CS2) Lizzo (CS2) Monty (CS2) Msay19 (CS2) PierreThree (CS2) PokyPuppy (CS2) Poland (CS2) RemRem (CS2) RoyalG (CS2) Sam12 (CS2) Sombrero (CS2) Squibbles (CS2) SteveFrench (CS2) Anamika (CS3) Berries (CS3) Bianmat (CS3) Charianelly (CS3) Damp (CS3) GalacticEye (CS3) Guillaume (CS3) Hail2Pitt (CS3) Harambe (CS3) Hello (CS3) Jams (CS3) Jormungandr (CS3) Kaseim (CS3) Lahirium (CS3) Lidong (CS3) Luker (CS3) Minos (CS3) MrWormie (CS3) Neoevie (CS3) Newt (CS3) Nimi13 (CS3) Shelley (CS3) Sticker17 (CS3) Teal (CS3) Woes (CS3) ASerpRocky (CS4) Benczkowski14 (CS4) Demosthenes (CS4) Hollow (CS4) Katyusha (CS4) Kvothe (CS4) Niagara (CS4) Philon9 (CS4) Teatealatte (CS4) Teech (CS4) Tredge (CS4)
Annotating Institution	University of Pittsburgh
Annotation Status	In GenBank
Plaque Notes	The plaques for Phage GourdThymes are relatively small (<2mm in diameter) and clear.
Number of Genes	105
Number of tRNAs	1
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View GourdThymes_1 GourdThymes_2 GourdThymes_3 GourdThymes_4 (DNA binding protein) GourdThymes_5 GourdThymes_6 GourdThymes_7 GourdThymes_8 (DNA primase/polymerase) GourdThymes_9 (terminase small subunit) GourdThymes_10 (terminase large subunit) GourdThymes_11 (portal protein) GourdThymes_12 (hydrolase) GourdThymes_13 GourdThymes_14 (capsid maturation protease) GourdThymes_15 (capsid decoration protein) GourdThymes_16 (major capsid protein) GourdThymes_17 GourdThymes_18 GourdThymes_19 (head-to-tail adaptor) GourdThymes_20 GourdThymes_21 GourdThymes_22 GourdThymes_23 (major tail protein) GourdThymes_24 — tRNA (tRNA-Asn(gtt)) GourdThymes_25 (tail assembly chaperone) GourdThymes_26 (tail assembly chaperone) GourdThymes_27 (tape measure protein) GourdThymes_28 (minor tail protein) GourdThymes_29 (minor tail protein) GourdThymes_30 (minor tail protein) GourdThymes_31 GourdThymes_32 (holin) GourdThymes_33 GourdThymes_34 (lysin A, N-acetylmuramoyl-L-alanine amidase domain) GourdThymes_35 (lysin A, protease M23 domain) GourdThymes_36 GourdThymes_37 GourdThymes_38 GourdThymes_39 GourdThymes_40 (Cas4 family exonuclease) GourdThymes_41 (WhiB family transcription factor) GourdThymes_42 GourdThymes_43 GourdThymes_44 GourdThymes_45 GourdThymes_46 (DNA methylase) GourdThymes_47 GourdThymes_48 GourdThymes_49 (lysin B) GourdThymes_50 (MazG-like nucleotide pyrophosphohydrolase) GourdThymes_51 GourdThymes_52 (RusA-like resolvase) GourdThymes_53 GourdThymes_54 (nucleoside deoxyribosyltransferase) GourdThymes_55 (DNA polymerase III sliding clamp) GourdThymes_56 (DnaQ-like DNA polymerase III) GourdThymes_57 (helix-turn-helix DNA binding domain protein) GourdThymes_58 GourdThymes_59 (DNA helicase) GourdThymes_60 GourdThymes_61 GourdThymes_62 GourdThymes_63 (helix-turn-helix DNA binding domain protein) GourdThymes_64 GourdThymes_65 GourdThymes_66 GourdThymes_67 GourdThymes_68 GourdThymes_69 GourdThymes_70 GourdThymes_71 GourdThymes_72 GourdThymes_73 GourdThymes_74 GourdThymes_75 GourdThymes_76 GourdThymes_77 GourdThymes_78 GourdThymes_79 GourdThymes_80 GourdThymes_81 GourdThymes_82 GourdThymes_83 GourdThymes_84 GourdThymes_85 GourdThymes_86 GourdThymes_87 GourdThymes_88 (CobT-like cobalamin biosynthesis protein) GourdThymes_89 (AAA-ATPase) GourdThymes_90 GourdThymes_91 GourdThymes_92 GourdThymes_93 GourdThymes_94 GourdThymes_95 GourdThymes_96 GourdThymes_97 GourdThymes_98 GourdThymes_99 GourdThymes_100 GourdThymes_101 GourdThymes_102 GourdThymes_103 GourdThymes_104 GourdThymes_105 GourdThymes_106
Submitted Minimal DNA Master File	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MT889370
Refseq Number	None yet
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	114
Pitt Freezer Box Grid#	D6
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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