Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Samantha J Pochiro |
Year Found | 2018 |
Location Found | Henderson, NV USA |
Finding Institution | College of Southern Nevada |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 30°C |
GPS Coordinates | 36.076304 N, 115.002681 W Map |
Discovery Notes | •The sample was collected at the City of Henderson Bird Viewing Preserve along the north east side of pond number 2 •The coordinates of the location is: 36.076304, -115.002681 •The sample was dry and had a lot of small twigs or broken root parts in it. I dug about an inch or two below the surface until I saw darker sand underneath the surface. •It was collected in Henderson, NV on 9/5/18. |
Naming Notes | Jellybones was named after a song from the band The Unicorns. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 2, 2019 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina Sequencing |
Approximate Shotgun Coverage | 1592 |
Genome length (bp) | 77514 |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 191 bp |
GC Content | 59.0% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CS |
Subcluster | CS2 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | College of Southern Nevada |
Annotation Status | In GenBank |
Plaque Notes | The phage produced small plaques ranging from 1/2mm to 1mm in size with distinct borders |
Morphotype | Siphoviridae |
Number of Genes | 108 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
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Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MN444874 |
Refseq Number | None yet |
Published in Paper | Harrington et al 2020, Microbiology Resource Announcements: Genome Sequences of Gordonia rubripertincta Bacteriophages Jellybones and NHagos |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
80 |
Pitt Freezer Box Grid# |
H2 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |