Arthrobacter phage MiniMommy
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Detailed Information for Phage MiniMommy
Discovery Information
Isolation HostArthrobacter sulfureus ATCC 19098
Former namesMicroMommy
Found ByCindy Kim
Year Found2023
Location FoundLos Angeles, CA US
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates34.06096 N, 118.44316 W Map
Discovery NotesPhage amplification was performed by making an enriched culture. 25 mL of PYCa and 4 mL of 48 hour mixed culture of Arthrobacter was added to the soil sample, which was subsequently incubated at 30ºC for 48 hours. Following filtration by using a 0.22 µm syringe, a 1-plate plaque assay was performed on Arthrobacter species, A. atrocyaneus, A. sulfureus, and A. globiformis to determine if enriched isolate contained phage. Plaques were found to be most prominent on A. sulfureus, which was used as the host bacteria for all subsequent experiments.

Team #1 Name: Daddy Gene Blot
Team #1 Members: Mulin Li, Diana Reyimjan, Sophie Barden, Niels Dawson, Cindy Kim

Team #2 Name: KERMit the Phage
Team #2 Members: Esha Chawla, Madeleine Lim, Ryan Hoang, Kirthana Pisipati



AL Quarter and Lab section: W23-1C
Instructor: Amanda Freise
Teaching Assistant: Juliet Stephenson
Undergraduate Assistant(s): Alexis and Kylie
Naming NotesWe are daddy and we need a mommy.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJul 19, 2023
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina MiSeq
Read TypeSingle-end reads
Read Length150 bp
Approximate Shotgun Coverage795
Genome length (bp)43680
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCGAACTGGCAT
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterAZ
SubclusterAZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh at Greensburg
Annotation StatusQC Complete
Plaque NotesHalo, 1mm diameter
Number of Genes68
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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MiniMommy_1
(terminase, small subunit)

MiniMommy_2
(terminase, large subunit)

MiniMommy_3
(portal protein)

MiniMommy_4

MiniMommy_5
(scaffolding protein)

MiniMommy_6
(major capsid protein)

MiniMommy_7
(head-to-tail adaptor)

MiniMommy_8
(head-to-tail stopper)

MiniMommy_9

MiniMommy_10
(tail terminator)

MiniMommy_11
(major tail protein)

MiniMommy_12
(tail assembly chaperone)

MiniMommy_13
(tail assembly chaperone)

MiniMommy_14
(tape measure protein)

MiniMommy_15
(minor tail protein)

MiniMommy_16
(minor tail protein)

MiniMommy_17
(minor tail protein)

MiniMommy_18
(minor tail protein)

MiniMommy_19

MiniMommy_20
(endolysin)

MiniMommy_21

MiniMommy_22

MiniMommy_23

MiniMommy_24

MiniMommy_25
(deoxynucleoside monophosphate kinase)

MiniMommy_26

MiniMommy_27
(Cas4 family exonuclease)

MiniMommy_28

MiniMommy_29
(HNH endonuclease)

MiniMommy_30

MiniMommy_31

MiniMommy_32
(nucleoside deoxyribosyltransferase)

MiniMommy_33
(LAGLIDADG endonuclease)

MiniMommy_34
(ThyX-like thymidylate synthase)

MiniMommy_35
(recombination directionality factor)

MiniMommy_36

MiniMommy_37

MiniMommy_38
(Nrdh-like glutaredoxin)

MiniMommy_39
(Holliday junction resolvase)

MiniMommy_40

MiniMommy_41
(DNA primase/helicase)

MiniMommy_42

MiniMommy_43

MiniMommy_44
(DNA polymerase I)

MiniMommy_45

MiniMommy_46

MiniMommy_47

MiniMommy_48
(DNA binding protein)

MiniMommy_49
(DNA binding protein)

MiniMommy_50

MiniMommy_51

MiniMommy_52
(SprT-like protease)

MiniMommy_53

MiniMommy_54

MiniMommy_55

MiniMommy_56

MiniMommy_57

MiniMommy_58

MiniMommy_59

MiniMommy_60

MiniMommy_61

MiniMommy_62

MiniMommy_63

MiniMommy_64

MiniMommy_65

MiniMommy_66

MiniMommy_67 — tRNA
(tRNA-Trp(cca))

MiniMommy_68

MiniMommy_69
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 184
Pitt Freezer Box Grid# E4
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload