Gordonia phage Niagara
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Detailed Information for Phage Niagara
Discovery Information
Isolation HostGordonia terrae 3612
Found ByQ. Giacobbe, S. Handley, S. Krimins, E. O'Callahan
Year Found2020
Location FoundPittsburgh, PA United States of America
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.44 N, 79.96 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 27, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage447
Genome length (bp)75306
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length1173 bp
GC Content59.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS4
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes99
Number of tRNAs0
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Niagara_1

Niagara_2

Niagara_3
(DNA helicase)

Niagara_4

Niagara_5

Niagara_6

Niagara_7

Niagara_8
(DNA primase)

Niagara_9

Niagara_10
(terminase)

Niagara_11
(portal protein)

Niagara_12

Niagara_13

Niagara_14
(capsid maturation protease)

Niagara_15
(capsid decoration protein)

Niagara_16
(major capsid protein)

Niagara_17

Niagara_18

Niagara_19
(head-to-tail adaptor)

Niagara_20

Niagara_21

Niagara_22

Niagara_23
(major tail protein)

Niagara_24
(tail assembly chaperone)

Niagara_25
(tail assembly chaperone)

Niagara_26
(tape measure protein)

Niagara_27
(minor tail protein)

Niagara_28
(minor tail protein)

Niagara_29
(minor tail protein)

Niagara_30

Niagara_31
(holin)

Niagara_32

Niagara_33
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Niagara_34
(lysin A, protease M23 domain)

Niagara_35

Niagara_36

Niagara_37

Niagara_38
(Cas4 family exonuclease)

Niagara_39
(WhiB family transcription factor)

Niagara_40

Niagara_41

Niagara_42
(DNA methylase)

Niagara_43

Niagara_44
(lysin B)

Niagara_45
(MazG-like pyrophosphohydrolase)

Niagara_46

Niagara_47
(RusA-like resolvase)

Niagara_48
(nucleoside deoxyribosyltransferase)

Niagara_49

Niagara_50
(DNA polymerase III sliding clamp beta)

Niagara_51

Niagara_52
(DnaQ-like DNA polymerase III subunit)

Niagara_53
(helix-turn-helix DNA binding domain protein)

Niagara_54

Niagara_55

Niagara_56

Niagara_57
(DNA helicase)

Niagara_58

Niagara_59

Niagara_60
(helix-turn-helix DNA binding domain protein)

Niagara_61

Niagara_62

Niagara_63

Niagara_64

Niagara_65

Niagara_66

Niagara_67

Niagara_68

Niagara_69

Niagara_70

Niagara_71

Niagara_72

Niagara_73

Niagara_74

Niagara_75

Niagara_76

Niagara_77
(HNH endonuclease)

Niagara_78

Niagara_79

Niagara_80

Niagara_81
(CobT-like cobalamin biosynthesis protein)

Niagara_82

Niagara_83

Niagara_84

Niagara_85
(AAA-ATPase)

Niagara_86

Niagara_87

Niagara_88

Niagara_89

Niagara_90

Niagara_91

Niagara_92

Niagara_93

Niagara_94

Niagara_95

Niagara_96

Niagara_97

Niagara_98

Niagara_99

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOM203156
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 125
Pitt Freezer Box Grid# H11
Available Files
Plaque PictureDownload
GenBank File for PhameratorDownload