Detailed Information for Phage PokyPuppy |
Discovery Information |
Isolation Host | Gordonia rubripertincta NRRL B-16540 |
Found By | Ella Eleven |
Year Found | 2021 |
Location Found | Socorro, NM America |
Finding Institution | New Mexico Institute of Mining and Technology |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Yes |
Isolation Temperature | 19°C |
GPS Coordinates | 34.06275 N, 106.903575 W Map |
Discovery Notes | Soil sample acquired from the side of a pond on the southeast end of NMTech campus. Ground was very wet and covered in pine needles+grass. Collected after scraping away top layer (~1/2 inch below surface.) |
Naming Notes | I named it Pokey because a bunch of plants poked my socks during collection, but just ‘Pokey’ was taken, so now it’s also my favorite children’s book. |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Jan 24, 2022 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 836 |
Genome length (bp) | 77065 |
Character of genome ends | Direct Terminal Repeat |
Direct Terminal Repeat Length | 192 bp |
GC Content | 59.1% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | CS |
Subcluster | CS2 |
Cluster Life Cycle | Lytic |
Other Cluster Members |
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Annotating Institution | New Mexico Institute of Mining and Technology |
Annotation Status | In GenBank |
Plaque Notes | Very small plaques. |
Morphotype | Siphoviridae |
Number of Genes | 104 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | ON456331 |
Refseq Number | None yet |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
136 |
Pitt Freezer Box Grid# |
F6 |
Available Files |
Plaque Picture | Download |
Restriction Digest Picture | Download |
EM Picture | Download |
GenBank File for Phamerator | Download |