Gordonia phage Jams
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Detailed Information for Phage Jams
Discovery Information
Isolation HostGordonia terrae 3612
Found ByAinslee Gregg, Tabea Schneider
Year Found2021
Location FoundPittsburgh, PA United States
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.44 N, 79.96 W Map
Discovery NotesFound outside a residence building near trees, weather was rainy and there were several bugs in the soil.
Naming NotesWe just both like jam.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2022
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Approximate Shotgun Coverage652
Genome length (bp)72636
Character of genome endsDirect Terminal Repeat
Direct Terminal Repeat Length184 bp
GC Content59.1%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCS
SubclusterCS3
Cluster Life CycleLytic
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Number of Genes92
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

Click to View

Jams_1

Jams_2
(DNA helicase)

Jams_3

Jams_4

Jams_5
(DNA primase)

Jams_6

Jams_7
(terminase)

Jams_8
(portal protein)

Jams_9

Jams_10

Jams_11
(capsid maturation protease)

Jams_12
(LamD-like capsid decoration protein)

Jams_13
(major capsid protein)

Jams_14

Jams_15

Jams_16
(head-to-tail adaptor)

Jams_17

Jams_18

Jams_19

Jams_20
(major tail protein)

Jams_21 — tRNA
(tRNA-Asn(gtt))

Jams_22
(tail assembly chaperone)

Jams_23
(tail assembly chaperone)

Jams_24
(tape measure protein)

Jams_25
(minor tail protein)

Jams_26
(minor tail protein)

Jams_27
(minor tail protein)

Jams_28

Jams_29

Jams_30

Jams_31

Jams_32

Jams_33
(holin)

Jams_34

Jams_35
(lysin A, N-acetylmuramoyl-L-alanine amidase domain)

Jams_36
(lysin A, protease M23 domain)

Jams_37

Jams_38

Jams_39

Jams_40

Jams_41
(Cas4 family exonuclease)

Jams_42
(WhiB family transcription factor)

Jams_43

Jams_44

Jams_45

Jams_46
(DNA methyltransferase)

Jams_47

Jams_48

Jams_49
(MazG-like nucleotide pyrophosphohydrolase)

Jams_50
(RusA-like resolvase)

Jams_51
(nucleoside deoxyribosyltransferase)

Jams_52
(DNA polymerase III sliding clamp beta)

Jams_53

Jams_54
(DnaQ-like DNA polymerase III subunit)

Jams_55
(helix-turn-helix DNA binding domain protein)

Jams_56

Jams_57
(DNA helicase)

Jams_58

Jams_59

Jams_60

Jams_61
(helix-turn-helix DNA binding domain protein)

Jams_62

Jams_63

Jams_64

Jams_65

Jams_66

Jams_67

Jams_68

Jams_69

Jams_70

Jams_71

Jams_72

Jams_73

Jams_74

Jams_75

Jams_76

Jams_77

Jams_78

Jams_79

Jams_80

Jams_81
(CobT-like cobalamin biosynthesis protein)

Jams_82
(AAA-ATPase)

Jams_83

Jams_84

Jams_85

Jams_86

Jams_87

Jams_88

Jams_89

Jams_90

Jams_91

Jams_92

Jams_93

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOP297547
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 141
Pitt Freezer Box Grid# E6
Available Files
GenBank File for PhameratorDownload