| Detailed Information for Phage Jebeks |
| Discovery Information |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Former names | JEBEKS |
| Found By | Kyle C. Smith, Jessica M. Engle, Brian J. Earley |
| Year Found | 2009 |
| Location Found | Provo, UT USA |
| Finding Institution | Brigham Young University |
| Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
| From enriched soil sample? | Yes |
| Isolation Temperature | Not entered |
| GPS Coordinates | 40.249333 N, 111.649494 W Map |
| Discovery Notes | Date: 12 Sep 2009
Time: 12:00pm
Temp: 11°
Site: BYU Harold B Lee Library Flower Bed
Sample: Top soil from a flower bed by Harold B Lee Library. (Fresh mulch, high organic content.) Depth <2 in. |
| Sequencing Information |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 26, 2012 |
| Sequencing Facility | BYU DNA Sequencing Center |
| Shotgun Sequencing Method | 454 |
| Sequencer Used | 454 Genome Sequencer FLX |
| Approximate Shotgun Coverage | 627 |
| Genome length (bp) | 45580 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | CCCGCCCCCCGA |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization |
| Cluster | P |
| Subcluster | P1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
|
| Annotating Institution | Unknown or unassigned |
| Annotation Status | In GenBank |
| Plaque Notes | Small circular 1mm, clear, well defined margins. |
| Morphotype | Siphoviridae |
| Number of Genes | 75 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
|
| Publication Info |
| Uploaded to GenBank? | Yes |
| GenBank Accession | JN572061 |
| Refseq Number | None yet |
| Published in Paper | Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity |
| Archiving Info |
| Archiving status |
Archived |
| SEA Designator |
2009BRYOjebeksKCSJMEBJE |
| SEA Lysate Titer |
1.4e11 |
| Date of SEA Lysate Titering |
Dec 22, 2010 |
| Pitt Freezer Box# |
11 |
| Pitt Freezer Box Grid# |
66 |
| Available Files |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| Final DNAMaster File | Download |
