| Detailed Information for Phage Kari | |
| Discovery Information | |
| Isolation Host | Mycobacterium smegmatis mc²155 |
| Found By | Deborah Jacobs-Sera |
| Year Found | 2023 |
| Location Found | Pittsburgh, PA USA |
| Finding Institution | University of Pittsburgh |
| Program | Phage Hunters Integrating Research and Education |
| From enriched soil sample? | Yes |
| Isolation Temperature | 37°C |
| GPS Coordinates | 40.443832 N, 79.951982 W Map |
| Discovery Notes | This sample was collected from under a rock in front of the log cabin situated on the lawn of the Cathedral of Learning. |
| Naming Notes | This phage is named after my oldest daughter Karoline, "Kari" for short. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 6, 2024 |
| Sequencing Facility | Pittsburgh Bacteriophage Institute |
| Shotgun Sequencing Method | Illumina |
| Approximate Shotgun Coverage | 20260 |
| Genome length (bp) | 47523 |
| Character of genome ends | 3' Sticky Overhang |
| Overhang Length | 12 bases |
| Overhang Sequence | CCCGCCCCCCGA |
| GC Content | 67.3% |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | P |
| Subcluster | P1 |
| Cluster Life Cycle | Temperate |
| Other Cluster Members |
Click to ViewArib1 (P1) Atcoo (P1) Bartholomew (P1) Bogie (P1) Brusacoram (P1) Bunnies (P1) CactusJack (P1) Camster (P1) Donovan (P1) Dynamo (P1) FirstPlacePfu (P1) Fishburne (P1) Glaske (P1) GreaseLightnin (P1) HUHilltop (P1) Jebeks (P1) Jung (P1) Juniormint (P1) Kari (P1) KilKor (P1) Ksquared (P1) Langerak (P1) Majeke (P1) Malithi (P1) Mangethe (P1) Megiddo (P1) Necropolis (P1) Phalm (P1) Phegasus (P1) Phineas (P1) Polkaroo (P1) Pygmy (P1) Shipwreck (P1) Sonah (P1) StevieRay (P1) StressBall (P1) Techage (P1) Thespis (P1) Venti (P1) Vidya (P1) Willsammy (P1) Zilizebeth (P1) Tortellini (P2) Xavia (P3) BigNuz (P4) Nazo (P4) Phayonce (P5) ThulaThula (P5) Purky (P6) |
| Annotating Institution | University of Pittsburgh |
| Annotation Status | Being Annotated (Expected completion by 12/31/2024) |
| Morphotype | Siphoviridae |
| Number of Genes | 77 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Has been Phamerated? | Yes |
| Gene List |
Click to ViewKari_1 Kari_2 Kari_3 Kari_4 Kari_5 Kari_6 Kari_7 Kari_8 Kari_9 Kari_10 Kari_11 Kari_12 Kari_13 Kari_14 Kari_15 Kari_16 Kari_17 Kari_18 Kari_19 Kari_20 Kari_21 Kari_22 Kari_23 Kari_24 Kari_25 Kari_26 Kari_27 Kari_28 Kari_29 Kari_30 Kari_31 Kari_32 Kari_33 Kari_34 Kari_35 Kari_36 Kari_37 Kari_38 Kari_39 Kari_40 Kari_41 Kari_42 Kari_43 Kari_44 Kari_45 Kari_46 Kari_47 Kari_48 Kari_49 Kari_50 Kari_51 Kari_52 Kari_53 Kari_54 Kari_55 Kari_56 Kari_57 Kari_58 Kari_59 Kari_60 Kari_61 Kari_62 Kari_63 Kari_64 Kari_65 Kari_66 Kari_67 Kari_68 Kari_69 Kari_70 Kari_71 Kari_72 Kari_73 Kari_74 Kari_75 Kari_76 Kari_77 |
| Publication Info | |
| Uploaded to GenBank? | No |
| GenBank Accession | None yet |
| Refseq Number | None yet |
| Archiving Info | |
| Archiving status | Not in Pitt Archives |
| Available Files | |
| Plaque Picture | Download |