Mycobacterium phage ActinUp
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Detailed Information for Phage ActinUp
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Former namesN/A
Found ByYorich Poole, Lucas Galassi
Year Found2016
Location FoundGreensburg, PA United States
Finding InstitutionSeton Hill University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature33°C
GPS Coordinates40.310755 N, 79.559596 W Map
Discovery NotesI discovered this phage in soil directly outside of Brownlee Residence Hall.
Naming NotesAlbeit this is not an Actinophage, the name brought a wide smile to my petite face.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 21, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1653
Genome length (bp)59812
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

MaeVan (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TrippyB (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Annotation StatusIn GenBank
Plaque NotesLarge, round, turbid plaque.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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ActinUp_1

ActinUp_2

ActinUp_3

ActinUp_4

ActinUp_6

ActinUp_7
(terminase small subunit)

ActinUp_8
(terminase large subunit)

ActinUp_9
(portal protein)

ActinUp_10
(capsid maturation protease)

ActinUp_11

ActinUp_12
(scaffolding protein)

ActinUp_13
(major capsid protein)

ActinUp_14
(head-to-tail connector protein)

ActinUp_15
(head-to-tail connector protein)

ActinUp_16

ActinUp_17

ActinUp_18
(major tail protein)

ActinUp_19
(tail assembly chaperone)

ActinUp_20
(tail assembly chaperone)

ActinUp_21
(tape measure protein)

ActinUp_22
(minor tail protein)

ActinUp_23
(minor tail protein)

ActinUp_24
(minor tail protein)

ActinUp_25
(minor tail protein)

ActinUp_26
(minor tail protein)

ActinUp_27
(minor tail protein)

ActinUp_28
(minor tail protein)

ActinUp_29

ActinUp_30
(lysin A)

ActinUp_31
(lysin B)

ActinUp_32
(holin)

ActinUp_33

ActinUp_34

ActinUp_35
(exonuclease)

ActinUp_36
(helix-turn-helix DNA binding domain protein)

ActinUp_37

ActinUp_38

ActinUp_39

ActinUp_40

ActinUp_41
(integrase)

ActinUp_42

ActinUp_43
(immunity repressor)

ActinUp_44
(helix-turn-helix DNA binding domain protein)

ActinUp_45
(helix-turn-helix DNA binding domain protein)

ActinUp_46

ActinUp_47

ActinUp_48

ActinUp_49
(helix-turn-helix DNA binding domain protein)

ActinUp_50
(WhiB family transcription factor)

ActinUp_51

ActinUp_52

ActinUp_53

ActinUp_54

ActinUp_55

ActinUp_56

ActinUp_57
(DNA polymerase III subunit)

ActinUp_58

ActinUp_59

ActinUp_60

ActinUp_61
(exonuclease)

ActinUp_62

ActinUp_63

ActinUp_64

ActinUp_65

ActinUp_66
(glutaredoxin)

ActinUp_67

ActinUp_68
(HNH endonuclease)

ActinUp_69
(DNA primase)

ActinUp_70

ActinUp_71
(resolvase)

ActinUp_72

ActinUp_73

ActinUp_74
(helix-turn-helix DNA binding domain protein)

ActinUp_75

ActinUp_76

ActinUp_77
(protease)

ActinUp_78

ActinUp_79

ActinUp_80
(helix-turn-helix DNA binding domain protein)

ActinUp_81

ActinUp_82
(helix-turn-helix DNA binding domain protein)

ActinUp_83

ActinUp_84

ActinUp_85

ActinUp_86
(RNA ligase)

ActinUp_87

ActinUp_88

ActinUp_89

ActinUp_90
(helix-turn-helix DNA binding domain protein)

ActinUp_91

ActinUp_92
(HicB-like antitoxin)

ActinUp_93
(HicB-like antitoxin)

ActinUp_94

ActinUp_95

ActinUp_96

ActinUp_97
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH051246
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 4.3 x 10^11
Pitt Freezer Box# 33
Pitt Freezer Box Grid# E10
Available Files
GenBank File for PhameratorDownload