Mycobacterium phage LindNT
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Detailed Information for Phage LindNT
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByNtombizodwa Maduna
Year Found2015
Location FoundPietermaritzburg, South Africa
Finding InstitutionUniversity of Kwazulu-Natal
ProgramMycobacterial Genetics Course, Durban, South Africa
From enriched soil sample?No
Isolation TemperatureNot entered
GPS Coordinates29.63376 S, 30.41095 E Map
Discovery NotesThe soil was obtained from a small scale vegetable garden which is tilled and watered everyday but not nourished. Garden is not more than 3 months old with red-brown clay loam soil.
Naming Notes"Lind" my mother"s name Lindiwe whom i love so much, has been there for me since day 1 and all her efforts are as a results of where i am now. I want her to take credit for my first discovery."NT" from my first name Ntombizodwa. Because i am a big fan of chocolate the name is pronounced as just "lindt"
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 7, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1673
Genome length (bp)60053
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.8%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

MaeVan (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Aminay (K7)

Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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LindNT_1

LindNT_2

LindNT_3

LindNT_4

LindNT_6

LindNT_7

LindNT_8
(terminase)

LindNT_9
(portal protein)

LindNT_10
(capsid maturation protease)

LindNT_11

LindNT_12
(scaffolding protein)

LindNT_13
(major capsid protein)

LindNT_14
(head-to-tail connector)

LindNT_15
(head-to-tail connector)

LindNT_16
(head-to-tail connector)

LindNT_17
(head-to-tail connector)

LindNT_18
(major tail protein)

LindNT_19
(tail assembly chaperone)

LindNT_20
(tail assembly chaperone)

LindNT_21
(tape measure protein)

LindNT_22
(minor tail protein)

LindNT_23
(minor tail protein)

LindNT_24
(minor tail protein)

LindNT_25
(minor tail protein)

LindNT_26
(minor tail protein)

LindNT_27
(minor tail protein)

LindNT_28
(minor tail protein)

LindNT_29

LindNT_30
(lysin A)

LindNT_31
(lysin B)

LindNT_32
(holin)

LindNT_33

LindNT_34

LindNT_35
(exonuclease)

LindNT_36

LindNT_37

LindNT_38

LindNT_39

LindNT_40

LindNT_41
(integrase)

LindNT_42

LindNT_43

LindNT_44
(HTH DNA binding domain protein)

LindNT_45
(HTH DNA binding protein)

LindNT_46
(HTH DNA binding protein)

LindNT_47

LindNT_48

LindNT_49
(WhiB)

LindNT_50

LindNT_51

LindNT_52

LindNT_53

LindNT_54

LindNT_55

LindNT_56
(DnaQ-like protein)

LindNT_57

LindNT_58

LindNT_59

LindNT_60

LindNT_61

LindNT_62

LindNT_63

LindNT_64

LindNT_65

LindNT_66
(NrdH-like protein)

LindNT_67

LindNT_68
(DNA primase/polymerase)

LindNT_69
(RusA)

LindNT_70

LindNT_71

LindNT_72
(peptidase)

LindNT_73

LindNT_74

LindNT_75
(SprT)

LindNT_76

LindNT_77

LindNT_78

LindNT_79

LindNT_80

LindNT_81

LindNT_82

LindNT_83
(RNA ligase)

LindNT_84

LindNT_85

LindNT_86

LindNT_87
(HTH DNA binding domain protein)

LindNT_88

LindNT_89

LindNT_90

LindNT_91

LindNT_92

LindNT_93

LindNT_94
(HNH endonuclease)

Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKX641264
Refseq NumberNone yet
Archiving Info
Archiving status Not in Pitt Archives
Available Files
Plaque PictureDownload
EM PictureDownload
Final DNAMaster FileDownload