Mycobacterium phage Hammy
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Detailed Information for Phage Hammy
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByGabriella Reyes
Year Found2015
Location FoundSlidell, LA USA
Finding InstitutionUniversity of Southern Mississippi
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates30.291389 N, 89.723611 W Map
Discovery NotesFrom the bank of Cross Gates neighborhood pond, also located behind an Autozone; compacted, moist soil, dug about 2 inches down to get sample; approximate air temperature: 90F
Naming NotesThroughout these lab experiments, my partner and I were always hungry, and we thought that fresh agar plates smelled like ham, so we named our phage “Hammy”
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 5, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage2914
Genome length (bp)61812
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content67.2%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK6
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

Frankicide (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

Lazy (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Shrek (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Humbert (K3)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

Mitti (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Cain (K6)

DarthP (K6)

Hammy (K6)

Krueger (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Plaque NotesOur plaques were clear and measured about 3mm in diameter
MorphotypeSiphoviridae
Final annotation complete?No
Has been Phamerated?Yes
Gene List

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Hammy_1

Hammy_2

Hammy_3
(terminase, small subunit)

Hammy_5

Hammy_6

Hammy_7
(terminase, large subunit)

Hammy_8
(portal protein)

Hammy_9
(capsid maturation protease)

Hammy_10

Hammy_11
(scaffolding protein)

Hammy_12
(major capsid protein)

Hammy_13
(head-to-tail connector protein)

Hammy_14
(head-to-tail connector protein)

Hammy_15
(head-to-tail connector protein)

Hammy_16
(head-to-tail connector protein)

Hammy_17
(major tail protein)

Hammy_18
(tail assembly chaperone)

Hammy_19
(tail assembly chaperone)

Hammy_20
(tape measure protein)

Hammy_21
(minor tail protein)

Hammy_22
(minor tail protein)

Hammy_23
(minor tail protein)

Hammy_24
(minor tail protein)

Hammy_25
(minor tail protein)

Hammy_26
(minor tail protein)

Hammy_27

Hammy_28

Hammy_29
(lysin A)

Hammy_30
(lysin B)

Hammy_31
(holin)

Hammy_32

Hammy_33

Hammy_34
(endonuclease)

Hammy_35

Hammy_36
(helix-turn-helix DNA binding protein)

Hammy_37

Hammy_38

Hammy_39
(queuine tRNA-glycosyltransferase)

Hammy_40

Hammy_41
(helix-turn-helix DNA binding domain protein)

Hammy_42
(integrase, (Y-int))

Hammy_43

Hammy_44
(membrane domain protein)

Hammy_45
(immunity repressor)

Hammy_46
(CRO (control of repressor's operator))

Hammy_47
(excise)

Hammy_48

Hammy_49

Hammy_50
(membrane domain protein)

Hammy_51

Hammy_52
(helix-turn-helix DNA binding protein)

Hammy_53
(WhiB family transcription factor)

Hammy_54

Hammy_55

Hammy_56

Hammy_57

Hammy_58
(DnaQ exonuclease (DNA polymerase III subunit))

Hammy_59

Hammy_60
(exonuclease)

Hammy_61

Hammy_62

Hammy_63

Hammy_64

Hammy_65

Hammy_66
(NrdH glutaredoxin)

Hammy_67
(HNH endonuclease)

Hammy_68
(DNA primase/polymerase)

Hammy_69
(RusA resolvase (endonuclease))

Hammy_70

Hammy_71
(HTH DNA binding protein)

Hammy_72

Hammy_73

Hammy_74
(membrane domain protein)

Hammy_75

Hammy_76

Hammy_77

Hammy_78
(membrane domain protein)

Hammy_79

Hammy_80

Hammy_81

Hammy_82

Hammy_83
(rtcB RNA ligase)

Hammy_84

Hammy_85

Hammy_86

Hammy_87

Hammy_88

Hammy_89

Hammy_90

Hammy_91

Hammy_92

Hammy_93

Hammy_94

Hammy_95
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionKY087993
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload