Mycobacterium phage LaterM
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Detailed Information for Phage LaterM
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByMarcia Brinck
Year Found2017
Location FoundLos Angeles, CA USA
Finding InstitutionUniversity of California, Los Angeles
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature30°C
GPS Coordinates34.059583 N, 118.449725 W Map
Discovery NotesPhage LaterM was isolated by Marcia Brinck on 04/11/2017 1 meter from residential building, minimal foot traffic, underneath bush, moist. Phage LaterM was isolated by enrichment plating at 30C.

Characterization was performed by Team The Life of Phablo (Marcia Brinck, Michael Murphy, Parker Sevier, Darwin Wu).

Name of Individual who collected sample: Marcia Brinck
Midi-Lysate (Archive) Titer: 5.4 e10
Date of Midi-Lysate Titer: 5/9/17

Instructor: Dr. Parker
Teaching Assistant: AJ Lund
Undergraduate Assistant: Sam Wu
Naming NotesTo say farewell to our group member Marcia who will be graduating this quarter.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedAug 29, 2017
Sequencing FacilityNC State Genomic Sciences Laboratory
Shotgun Sequencing MethodIllumina Sequencing
Genome length (bp)60143
Character of genome endsUnknown
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

Lazy (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Aminay (K7)

Annotation StatusIn GenBank
Plaque NotesTurbid
Average size (and size range) diameter in mm: 3mm – 5mm, average size: 4mm
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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LaterM_1

LaterM_2

LaterM_3

LaterM_4

LaterM_6

LaterM_7
(terminase, small subunit)

LaterM_8
(terminase, large subunit)

LaterM_9
(portal protein)

LaterM_10
(capsid maturation protease)

LaterM_11

LaterM_12
(scaffolding protein)

LaterM_13
(major capsid protein)

LaterM_14
(head-to-tail-connector complex protein)

LaterM_15
(head-to-tail-connector complex protein)

LaterM_16

LaterM_17
(head-to-tail connector complex protein)

LaterM_18
(major tail protein)

LaterM_19
(tail assembly chaperone)

LaterM_20
(tail assembly chaperone)

LaterM_21
(tape measure protein)

LaterM_22
(minor tail protein)

LaterM_23
(minor tail protein)

LaterM_24
(minor tail protein)

LaterM_25
(minor tail protein)

LaterM_26
(minor tail protein)

LaterM_27
(minor tail protein)

LaterM_28
(minor tail protein)

LaterM_29

LaterM_30
(lysin A)

LaterM_31
(lysin B)

LaterM_32
(holin)

LaterM_33

LaterM_34

LaterM_35
(exonuclease)

LaterM_36
(helix-turn-helix DNA binding domain)

LaterM_37

LaterM_38

LaterM_39

LaterM_40
(queuine tRNA-ribosyltransferase)

LaterM_41

LaterM_42
(integrase, Y-int)

LaterM_43
(membrane protein)

LaterM_44
(immunity repressor)

LaterM_45
(CRO (control of repressor s operator))

LaterM_46
(excise)

LaterM_47

LaterM_48
(membrane domain protein)

LaterM_49

LaterM_50
(helix-turn-helix DNA binding domain)

LaterM_51
(WhiB family transcription factor)

LaterM_52

LaterM_53

LaterM_54

LaterM_55

LaterM_56

LaterM_57

LaterM_58
(dnaQ exonuclease (DNA polymerase III subunit))

LaterM_59

LaterM_60

LaterM_61
(exonuclease)

LaterM_62

LaterM_63

LaterM_64

LaterM_65

LaterM_66

LaterM_67
(NrdH glutaredoxin)

LaterM_68
(HNH endonuclease)

LaterM_69
(DNA primase/ polymerase)

LaterM_70
(RusA resolvase (endonuclease))

LaterM_71

LaterM_72

LaterM_73

LaterM_74

LaterM_75

LaterM_76

LaterM_77

LaterM_78

LaterM_79

LaterM_80
(membrane protein)

LaterM_81

LaterM_82

LaterM_83

LaterM_84

LaterM_85
(rtcB RNA ligase)

LaterM_86

LaterM_87

LaterM_88

LaterM_89

LaterM_90

LaterM_91
(antitoxin in toxin/antitoxin system, HicB-like)

LaterM_92
(toxin in toxin/antitoxin system, HicA-like)

LaterM_93

LaterM_94

LaterM_95

LaterM_96
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMG962371
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload