Mycobacterium phage Joy99
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Detailed Information for Phage Joy99
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByHo Yee Joyce Fung and Suchita Rastogi
Year Found2008
Location FoundSt Louis, MO USA
Finding InstitutionWashington University in St. Louis
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates38.664567 N, 90.3179 W Map
Discovery NotesArea that is used for a municipal mulch pile. Soil depth 1 cm at 70 degrees.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMar 12, 2012
Approximate Shotgun Coverage157
Genome length (bp)59837
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

MaeVan (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Noonan (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Chris (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Deby (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

Lefty (K1)

Lela18 (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MarkPhew (K1)

Mendoza (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TinkerBelle (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

BoostSeason (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

MissDaisy (K4)

Mitti (K4)

Patt (K4)

Reptar3000 (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Rando14 (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Euphorie (K6)

Hammy (K6)

Krueger (K6)

Lazy (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

Aminay (K7)

Annotation StatusIn GenBank
Plaque NotesThree-ring morphology; clear center spot, heavy thin middle ring, clouded, turbid outer ring/incubation 24 hours at 37 degree Celsius
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Joy99_1

Joy99_2

Joy99_3

Joy99_4

Joy99_6

Joy99_7
(terminase small subunit)

Joy99_8
(terminase large subunit)

Joy99_9
(portal protein)

Joy99_10
(capsid maturation protease)

Joy99_11

Joy99_12
(scaffolding protein)

Joy99_13
(major capsid protein)

Joy99_14
(head-to-tail connector complex protein)

Joy99_15
(head-to-tail connector complex protein)

Joy99_16

Joy99_17

Joy99_18
(major tail protein)

Joy99_19
(tail assembly chaperone)

Joy99_20
(tail assembly chaperone)

Joy99_21
(tape measure protein)

Joy99_22
(minor tail protein)

Joy99_23
(minor tail protein)

Joy99_24
(minor tail protein)

Joy99_25
(minor tail protein)

Joy99_26
(minor tail protein)

Joy99_27
(minor tail protein)

Joy99_28
(minor tail protein)

Joy99_29

Joy99_30
(lysin A)

Joy99_31
(lysin B)

Joy99_32
(holin)

Joy99_33

Joy99_34

Joy99_35
(exonuclease)

Joy99_36
(helix-turn-helix DNA binding domain protein)

Joy99_37

Joy99_38

Joy99_39

Joy99_40

Joy99_41
(integrase)

Joy99_42
(membrane protein)

Joy99_43
(immunity repressor)

Joy99_44
(Cro protein)

Joy99_45
(excise)

Joy99_46

Joy99_47

Joy99_48

Joy99_49
(helix-turn-helix DNA binding domain protein)

Joy99_50
(WhiB family transcription factor)

Joy99_51

Joy99_52

Joy99_53

Joy99_54

Joy99_55

Joy99_56

Joy99_57
(DnaE-like DNA polymerase III alpha)

Joy99_58

Joy99_59

Joy99_60

Joy99_61
(exonuclease)

Joy99_62

Joy99_63

Joy99_64

Joy99_65

Joy99_66
(NrdH-like glutaredoxin)

Joy99_67

Joy99_68
(HNH endonuclease)

Joy99_69
(DNA primase)

Joy99_70

Joy99_71
(RusA-like resolvase)

Joy99_72

Joy99_73

Joy99_74
(helix-turn-helix DNA binding domain protein)

Joy99_75

Joy99_76

Joy99_77
(SprT-like protease)

Joy99_78

Joy99_79

Joy99_80
(helix-turn-helix DNA binding domain protein)

Joy99_81

Joy99_82
(helix-turn-helix DNA binding domain protein)

Joy99_83

Joy99_84

Joy99_85

Joy99_86
(RtcB-like ligase)

Joy99_87

Joy99_88

Joy99_89

Joy99_90

Joy99_91

Joy99_92
(HicB-like antitoxin)

Joy99_93
(HicA-like toxin)

Joy99_94

Joy99_95

Joy99_96

Joy99_97

Joy99_98
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMH536822
Refseq NumberNone yet
Published in PaperPope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status Archived
SEA Designator 2008WUSLjoy99SE
SEA Lysate Titer 1.3e10
Pitt Freezer Box# 10
Pitt Freezer Box Grid# 4
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload