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Mycobacterium phage DismalFunk
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Detailed Information for Phage DismalFunk
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByHolly Funkhouser
Year Found2015
Location FoundSouth Mills, NC United States
Finding InstitutionCollege of William & Mary
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates36.50356 N, 76.353447 W Map
Naming NotesMy phage came from the Dismal Swamp and my last name is Funkhouser. Therefore I named my phage DismalFunk. It is a little part of my phage and a little part of me.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 15, 2016
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage891
Genome length (bp)58129
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCTCGCGGCAT
GC Content68.3%
Sequencing NotesThere are two variable positions in the sequencing data for this phage.

At position 20968, about 33% of the reads show an A instead of the published G.
At position 25813, about 50% of the reads show a C instead of the published T.
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK2
Other Cluster Members

Click to View

Aella (None)

AllaKazam (None)

Aloysius (None)

Andy (None)

Asayake (None)

Aspen (None)

Auroraborealis (None)

BackInNotBlack (None)

BaenaC (None)

Bailcon (None)

BasselJr (None)

Boogaloo (None)

Boyz (None)

Calcy (None)

Caroline (None)

Caspian (None)

Chat (None)

Cirrostratus (None)

Clarence (None)

Cookland (None)

Cortana (None)

Cunlay (None)

Dcuz (None)

Denara (None)

Dor110 (None)

DoubleSloth (None)

Dougal (None)

DrThomas (None)

DubyaDubya (None)

ElegantBeing (None)

Erinyes (None)

Fisch (None)

FitzSpotz (None)

Frankicide (None)

GoBuffs (None)

GUsh (None)

GUsthebus (None)

Isa16 (None)

Jallie (None)

Jamanda (None)

Jameskc (None)

Kennel (None)

KevinPhangos (None)

LaFlor (None)

LanaDelPhay (None)

Lancelot (None)

Lazy (None)

LilPhil (None)

LuckyWorm (None)

MacArthur (None)

Machine (None)

ManBun (None)

Marilu (None)

Marvolo (None)

McSparkle (None)

Meow (None)

Mileyphyrus (None)

Misa (None)

Mochi (None)

Nestitis (None)

NimNO (None)

Pablo (None)

PeachyKay (None)

Pegasicorn (None)

Phaedra (None)

Phaguccine (None)

Phlynn (None)

Pita107 (None)

Plaqccine (None)

Pluto15 (None)

Poochlock (None)

PresidentPhayn (None)

PresThayne (None)

PuddlePaige (None)

Reina (None)

Rivierearbre (None)

Sabotage (None)

Shrek (None)

Smore (None)

Speckles360 (None)

SpeedyClaxton (None)

Spots16 (None)

Stoya (None)

SuJos8 (None)

SwaggyP (None)

Syra333 (None)

Thayne (None)

Tomothy (None)

TRossi (None)

Uilani (None)

Winton (None)

Wivia (None)

Yachna (None)

Yianni (None)

Zag19 (None)

Zagup (None)

Zhage (None)

ActinUp (K1)

Adephagia (K1)

Adonis (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Atiba (K1)

BarrelRoll (K1)

Bash (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Biglebops (K1)

Blessed (K1)

BlueSky (K1)

Capricorn (K1)

Christoria (K1)

CREW (K1)

CrimD (K1)

Dalmuri (K1)

DrHayes (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Erdnod (K1)

Flash (K1)

Gansey (K1)

Geraldini (K1)

Guanica15 (K1)

Guimauve (K1)

HedwigODU (K1)

Homura (K1)

JAWS (K1)

Jeckyll (K1)

Jerome (K1)

Jersey (K1)

Jophie (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

Lefty (K1)

LeMond (K1)

LeslieK (K1)

LilPharaoh (K1)

LindNT (K1)

MicroMini (K1)

MLouK (K1)

Mozingo (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Niklas (K1)

Oscar (K1)

Peanam (K1)

PhindingNemo (K1)

Phineas3776 (K1)

Pompey (K1)

Prithvi (K1)

Ramen (K1)

Rapunzel97 (K1)

Rozay (K1)

SamuelLPlaqson (K1)

Sarang (K1)

Scarlett (K1)

Schmutz (K1)

SgtBeansprout (K1)

Shaobing (K1)

Slimphazie (K1)

Smurfee (K1)

Sulley (K1)

Tachez (K1)

TreyKay (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

Vidiian (K1)

Wilota (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zavala (K1)

BontFonne (K2)

Cygnus24 (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Hyperbowlee (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Persephone (K2)

TM4 (K2)

Uncooperative (K2)

Zigg (K2)

ZoeJ (K2)

Humbert (K3)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pixie (K3)

RonKinser (K3)

ShedlockHolmes (K3)

TBond007 (K3)

Chancellor (K4)

Cheetobro (K4)

Fionnbharth (K4)

Mitti (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

AlleyCat (K5)

Collard (K5)

Edugator (K5)

Gengar (K5)

Guillsminger (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

NemNuong (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Cain (K6)

DarthP (K6)

Hammy (K6)

Krueger (K6)

PhelpsODU (K6)

Phrank (K6)

SirPhilip (K6)

Unicorn (K6)

Ximenita (K6)

MorphotypeSiphoviridae
Final annotation complete?Yes
Has been Phamerated?Yes
Gene List

Click to View

DismalFunk_1

DismalFunk_2

DismalFunk_3
(terminase, small subunit)

DismalFunk_4
(terminase, large subunit)

DismalFunk_5
(portal protein)

DismalFunk_6
(capsid maturation protease)

DismalFunk_7

DismalFunk_8
(scaffolding protein)

DismalFunk_9
(major capsid protein)

DismalFunk_10
(head-to-tail connector protein)

DismalFunk_11
(head-to-tail connector protein)

DismalFunk_12
(head-to-tail connector protein)

DismalFunk_13
(head-to-tail connector protein)

DismalFunk_14
(major tail protein)

DismalFunk_15
(tail assembly chaperone)

DismalFunk_16
(tail assembly chaperone)

DismalFunk_17
(tape measure protein)

DismalFunk_18
(minor tail protein)

DismalFunk_19
(minor tail protein)

DismalFunk_20
(minor tail protein)

DismalFunk_21
(minor tail protein)

DismalFunk_22
(minor tail protein)

DismalFunk_23
(minor tail protein)

DismalFunk_24
(minor tail protein)

DismalFunk_25
(minor tail protein)

DismalFunk_26

DismalFunk_27

DismalFunk_28
(lysin A)

DismalFunk_29
(lysin B)

DismalFunk_30
(holin)

DismalFunk_31

DismalFunk_32

DismalFunk_33

DismalFunk_34
(exonuclease)

DismalFunk_35
(DNA binding protein)

DismalFunk_36
(HTH DNA binding protein)

DismalFunk_37

DismalFunk_38

DismalFunk_39

DismalFunk_40

DismalFunk_41
(ssDNA binding protein)

DismalFunk_42
(queuine tRNA-ribosyltransferase)

DismalFunk_43
(integrase, (Y-int))

DismalFunk_44

DismalFunk_45

DismalFunk_46
(immunity repressor)

DismalFunk_47
(CRO (control of repressor's operator))

DismalFunk_48
(excise)

DismalFunk_49

DismalFunk_50

DismalFunk_51

DismalFunk_52

DismalFunk_53
(HTH DNA binding protein)

DismalFunk_54
(WhiB family transcription factor)

DismalFunk_55
(hydrolase)

DismalFunk_56

DismalFunk_57

DismalFunk_58

DismalFunk_59

DismalFunk_60
(DnaQ exonuclease (DNA polymerase III subunit))

DismalFunk_61
(hydrolase)

DismalFunk_62
(exonuclease)

DismalFunk_63

DismalFunk_64

DismalFunk_65

DismalFunk_66

DismalFunk_67

DismalFunk_68

DismalFunk_69
(NrdH-like glutaredoxin)

DismalFunk_70

DismalFunk_71
(HNH endonuclease)

DismalFunk_72
(DNA primase/helicase)

DismalFunk_73

DismalFunk_74
(RusA resolvase (endonuclease))

DismalFunk_75

DismalFunk_76

DismalFunk_77
(DNA binding protein)

DismalFunk_78

DismalFunk_79

DismalFunk_80

DismalFunk_81

DismalFunk_82
(SprT protease)

DismalFunk_83
(HTH DNA binding protein)

DismalFunk_84

DismalFunk_85

DismalFunk_86

DismalFunk_87

DismalFunk_88

DismalFunk_89

DismalFunk_90

DismalFunk_91

DismalFunk_92

DismalFunk_93

DismalFunk_94
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMF140408
Refseq NumberNone yet
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
Final DNAMaster FileDownload
GenBank File for PhameratorDownload