Gordonia phage Antonio
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Detailed Information for Phage Antonio
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHannah Madara
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature30°C
GPS Coordinates40.4432 N, 79.9597 W Map
Discovery NotesThis phage was found from a soil sample collected on the corner of O'Hara street and De Soto Street, outside of a UPMC building in what appeared to be a flower bed. The weather was cold, 20 degrees F, and there was snow on the ground.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedMay 12, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1930
Genome length (bp)50337
Character of genome ends3' Sticky Overhang
Overhang Length10 bases
Overhang SequenceCGGCTGGGGA
GC Content66.7%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ1
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesThe plaques vary in size from .5mm up to 3mm. They are all completely clear and appear circular in size.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Antonio_1
(terminase small subunit)

Antonio_2
(terminase large subunit)

Antonio_3

Antonio_4
(portal protein)

Antonio_5
(capsid maturation protease)

Antonio_6
(major capsid protein)

Antonio_7

Antonio_8
(head-to-tail adaptor)

Antonio_9
(head-to-tail stopper)

Antonio_10

Antonio_11
(tail terminator)

Antonio_12
(major tail protein)

Antonio_13

Antonio_14
(tail assembly chaperone)

Antonio_15
(tail assembly chaperone)

Antonio_16

Antonio_17
(tape measure protein)

Antonio_18
(minor tail protein)

Antonio_19
(minor tail protein)

Antonio_20
(lysin A, L-Ala-D-Glu peptidase domain)

Antonio_21

Antonio_22
(lysin A, glycosyl hydrolase domain)

Antonio_23
(holin)

Antonio_24

Antonio_25

Antonio_26

Antonio_27
(lysin B)

Antonio_28
(minor tail protein)

Antonio_29

Antonio_30
(minor tail protein)

Antonio_31

Antonio_32
(metalloprotease)

Antonio_33

Antonio_34

Antonio_35
(helix-turn-helix DNA binding domain protein)

Antonio_36

Antonio_37

Antonio_38

Antonio_39
(integrase)

Antonio_40

Antonio_41

Antonio_42
(helix-turn-helix DNA binding domain protein)

Antonio_43
(metalloprotease)

Antonio_44
(immunity repressor)

Antonio_45
(helix-turn-helix DNA binding domain protein)

Antonio_46

Antonio_47

Antonio_48
(antirepressor)

Antonio_49

Antonio_50

Antonio_51

Antonio_52

Antonio_53

Antonio_54

Antonio_55

Antonio_56
(RecE-like exonuclease)

Antonio_57
(RecT-like ssDNA binding protein)

Antonio_58

Antonio_59

Antonio_60

Antonio_61
(ASC-1 transciption coactivator)

Antonio_62

Antonio_63
(DNA methylase)

Antonio_64

Antonio_65

Antonio_66

Antonio_67
(helix-turn-helix DNA binding protein)

Antonio_68

Antonio_69

Antonio_70
(RusA-like resolvase)

Antonio_71

Antonio_72

Antonio_73

Antonio_74
(helix-turn-helix DNA binding domain protein)

Antonio_75

Antonio_76

Antonio_77

Antonio_78
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK814755
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.67 x 10^10 pfu/mL
Date of SEA Lysate Titering Feb 14, 2017
Pitt Freezer Box# 55
Pitt Freezer Box Grid# C6
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
GenBank File for PhameratorDownload