Gordonia phage Clark
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Detailed Information for Phage Clark
Discovery Information
Isolation HostGordonia terrae 3612
Found ByTaylor Clark
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation Temperature37°C
GPS Coordinates40.4453 N, 79.9617 W Map
Discovery Notes- The soil sample was frozen because of the frozen ground and somewhat mixed in with large chunks of mulch.
- The conditions were not very desirable, as the ground was frozen and the temperature was about 10 degrees Celsius. Likewise, there was a large amount of snow on the ground.
Naming NotesMy last name
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedNov 14, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1241
Genome length (bp)47716
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTGCCAAGGGGA
GC Content66.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
Plaque Notes- plaques are clear in the middle, sometimes have a turbid outer circle
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Clark_1
(HNH endonuclease)

Clark_2
(terminase, small subunit)

Clark_3
(terminase, large subunit)

Clark_4
(portal protein)

Clark_5
(capsid maturation protease)

Clark_6
(scaffolding protein)

Clark_7
(major capsid protein)

Clark_8

Clark_9
(head-to-tail adaptor)

Clark_10
(head-to-tail stopper)

Clark_11

Clark_12
(tail terminator)

Clark_13
(major tail protein)

Clark_14

Clark_15
(tail assembly chaperone)

Clark_16
(tail assembly chaperone)

Clark_17

Clark_18
(tape measure protein)

Clark_19
(minor tail protein)

Clark_20
(minor tail protein)

Clark_21
(lysin A)

Clark_22
(membrane protein)

Clark_23
(membrane protein)

Clark_24

Clark_25
(lysin B)

Clark_26

Clark_27

Clark_28

Clark_29
(hydrolase)

Clark_30
(acetyltransferase)

Clark_31

Clark_32

Clark_33

Clark_34

Clark_35

Clark_36
(integrase, (Y-int))

Clark_37

Clark_38

Clark_39
(integrase, (Y-int))

Clark_40
(helix-turn-helix DNA binding domain)

Clark_41
(peptidase)

Clark_42

Clark_43
(immunity repressor)

Clark_44
(helix-turn-helix DNA binding domain)

Clark_45

Clark_46
(antirepressor)

Clark_47

Clark_48

Clark_49
(helix-turn-helix DNA binding domain)

Clark_50

Clark_51

Clark_52

Clark_53
(RecE-like exonuclease)

Clark_54
(RecT-like ssDNA binding protein)

Clark_55
(membrane protein)

Clark_56

Clark_57

Clark_58
(methyltransferase)

Clark_59

Clark_60

Clark_61

Clark_62

Clark_63

Clark_64
(helix-turn-helix DNA binding domain)

Clark_65

Clark_66
(HNH endonuclease)

Clark_67
(helix-turn-helix DNA binding domain)

Clark_68

Clark_69
(RusA-like resolvase (endonuclease))

Clark_70

Clark_71

Clark_72

Clark_73

Clark_74
(helix-turn-helix DNA binding domain)

Clark_75

Clark_76

Clark_77

Clark_78
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK801729
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# D12
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload