Gordonia phage Pickett
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Detailed Information for Phage Pickett
Discovery Information
Isolation HostGordonia terrae 3612
Former namesMrBates
Found BySydney McGahey
Year Found2020
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.438116 N, 79.954015 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 27, 2021
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1278
Genome length (bp)45413
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTACCAGGGGGA
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ2
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionUniversity of Pittsburgh
Annotation StatusIn GenBank
Plaque NotesPlaques that start off clear but show mesa formation after few days - likely a lysogen. Plaques are about 1.5-2mm in diameter, on average.
Has been Phamerated?Yes
Gene List

Click to View

Pickett_1
(terminase small subunit)

Pickett_2
(terminase large subunit)

Pickett_3
(portal protein)

Pickett_4
(capsid maturation protease)

Pickett_5
(scaffolding protein)

Pickett_6
(major capsid protein)

Pickett_7

Pickett_8
(head-to-tail adaptor)

Pickett_9
(head-to-tail stopper)

Pickett_10

Pickett_11
(tail terminator)

Pickett_12
(major tail protein)

Pickett_13
(tail assembly chaperone)

Pickett_14
(tail assembly chaperone)

Pickett_15
(tape measure protein)

Pickett_16
(minor tail protein)

Pickett_17
(minor tail protein)

Pickett_18
(lysin A)

Pickett_19
(holin)

Pickett_20

Pickett_21

Pickett_22

Pickett_23
(lysin B)

Pickett_24
(minor tail protein)

Pickett_25

Pickett_26

Pickett_27

Pickett_28

Pickett_29
(RelB-like antitoxin)

Pickett_30
(RelE-like toxin)

Pickett_31

Pickett_32
(tyrosine integrase)

Pickett_33

Pickett_34
(DNA binding protein)

Pickett_35
(helix-turn-helix DNA binding domain protein)

Pickett_36
(metalloprotease)

Pickett_37
(immunity repressor)

Pickett_38
(helix-turn-helix DNA binding domain protein)

Pickett_39

Pickett_40

Pickett_41
(antirepressor)

Pickett_42

Pickett_43
(helix-turn-helix DNA binding domain protein)

Pickett_44

Pickett_45

Pickett_46

Pickett_47

Pickett_48

Pickett_49
(RecE-like exonuclease)

Pickett_50
(RecT-like ssDNA binding protein)

Pickett_51

Pickett_52

Pickett_53

Pickett_54
(ASC-1 transcription coactivator)

Pickett_55

Pickett_56
(DNA methylase)

Pickett_57
(methyltransferase)

Pickett_58

Pickett_59

Pickett_60

Pickett_61
(ADP-ribosyltransferase)

Pickett_62

Pickett_63

Pickett_64

Pickett_65
(RusA-like resolvase)

Pickett_66

Pickett_67
(helix-turn-helix DNA binding domain protein)

Pickett_68

Pickett_69

Pickett_70

Pickett_71

Pickett_72

Pickett_73

Pickett_74
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionOM203160
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 125
Pitt Freezer Box Grid# H7
Available Files
GenBank File for PhameratorDownload