Gordonia phage Denise
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Denise
Discovery Information
Isolation HostGordonia terrae 3612
Found ByRebecca Oberschmidt
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature30°C
GPS Coordinates40.445724 N, 79.962791 W Map
Discovery NotesThe sample was transported for approximately two hours in cool, dry location. The collection location was removed from foot traffic although there was nearby vegetation. The weather conditions were very cold so the soil was essentially frozen
Naming NotesThe phage was named after my mom.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 19, 2017
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1210
Genome length (bp)45043
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTACCAGGGGGA
GC Content65.4%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ5
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionFlorida International University
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

Click to View

Denise_1
(terminase small subunit)

Denise_2
(terminase large subunit)

Denise_3
(portal protein)

Denise_4
(capsid maturation protease)

Denise_5
(scaffolding protein)

Denise_6
(major capsid protein)

Denise_7

Denise_8
(head-to-tail adaptor)

Denise_9
(head-to-tail stopper)

Denise_10

Denise_11
(tail terminator)

Denise_12
(major tail protein)

Denise_13
(tail assembly chaperone)

Denise_14
(tail assembly chaperone)

Denise_15
(tape measure protein)

Denise_16
(minor tail protein)

Denise_17
(minor tail protein)

Denise_18
(lysin A)

Denise_19

Denise_20
(membrane protein)

Denise_21
(membrane protein)

Denise_22
(lysin B)

Denise_23
(minor tail protein)

Denise_24
(minor tail protein)

Denise_25

Denise_26
(membrane protein)

Denise_27

Denise_28
(ribbon-helix-helix DNA binding domain protein)

Denise_29

Denise_30

Denise_31
(membrane protein)

Denise_32

Denise_33

Denise_34

Denise_35
(tyrosine integrase)

Denise_36
(metalloprotease)

Denise_37
(immunity repressor)

Denise_38
(helix-turn-helix DNA binding protein)

Denise_39
(helix-turn-helix DNA binding protein)

Denise_40

Denise_41
(helix-turn-helix DNA binding domain protein)

Denise_42

Denise_43
(excise)

Denise_44

Denise_45

Denise_46

Denise_47

Denise_48

Denise_49

Denise_50

Denise_51
(Cas4 family exonuclease)

Denise_52

Denise_53

Denise_54

Denise_55

Denise_56

Denise_57

Denise_58

Denise_59

Denise_60

Denise_61

Denise_62
(helix-turn-helix DNA binding domain protein)

Denise_63
(RepA-like replication initiator)

Denise_64

Denise_65
(RusA-like resolvase)

Denise_66

Denise_67
(DNA polymerase III subunit)

Denise_68
(membrane protein)

Denise_69

Denise_70

Denise_71
(helix-turn-helix DNA binding domain protein)

Denise_72

Denise_73

Denise_74

Denise_75

Denise_76

Denise_77

Denise_78
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMN428053
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 55
Pitt Freezer Box Grid# E9
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload