Gordonia phage Hortense
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Detailed Information for Phage Hortense
Discovery Information
Isolation HostGordonia terrae 3612
Found ByMarina Duka
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Unknown
Isolation TemperatureNot entered
GPS Coordinates40.442649 N, 79.95648 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedDec 20, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage432
Genome length (bp)53182
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTGCCAAGGGGA
GC Content65.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ4
Cluster Life CycleTemperate
Other Cluster Members
Annotating InstitutionNorthwestern Connecticut Community Colleges
Annotation StatusIn GenBank
Plaque NotesThe morphology of the plaques come in two forms. The first morphology is small, clear, circular plaques with their diameter being ~3mm. The other morphology is the small, clear plaques, but they form halos around these clear plaques with the diameter being ~6mm.
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Hortense_1
(terminase small subunit)

Hortense_2
(terminase large subunit)

Hortense_3
(portal protein)

Hortense_4
(capsid maturation protease)

Hortense_5
(scaffolding protein)

Hortense_6
(major capsid protein)

Hortense_7

Hortense_8
(head-to-tail adaptor)

Hortense_9

Hortense_10
(minor capsid protein)

Hortense_11
(tail terminator)

Hortense_12
(major tail protein)

Hortense_13

Hortense_14

Hortense_15
(tail assembly chaperone)

Hortense_16
(tail assembly chaperone)

Hortense_17

Hortense_18
(tape measure protein)

Hortense_19
(minor tail protein)

Hortense_20
(minor tail protein)

Hortense_21
(lysin A)

Hortense_22

Hortense_23

Hortense_24

Hortense_25
(lysin B)

Hortense_26

Hortense_27

Hortense_28

Hortense_29
(minor tail protein)

Hortense_30
(glycosyltransferase)

Hortense_31
(glycosyltransferase)

Hortense_32

Hortense_33

Hortense_34
(helix-turn-helix DNA binding domain protein)

Hortense_35

Hortense_36
(tyrosine integrase)

Hortense_37

Hortense_38

Hortense_39

Hortense_40
(tyrosine integrase)

Hortense_41
(helix-turn-helix DNA binding domain protein)

Hortense_42
(helix-turn-helix DNA binding domain protein)

Hortense_43

Hortense_44
(helix-turn-helix DNA binding domain protein)

Hortense_45
(immunity repressor)

Hortense_46
(helix-turn-helix DNA binding domain protein)

Hortense_47

Hortense_48

Hortense_49
(antirepressor)

Hortense_50

Hortense_51

Hortense_52
(excise)

Hortense_53

Hortense_54
(DNA methylase)

Hortense_55

Hortense_56

Hortense_57
(RecE-like exonuclease)

Hortense_58
(HNH endonuclease)

Hortense_59
(RecT-like ssDNA binding protein)

Hortense_60

Hortense_61

Hortense_62

Hortense_63

Hortense_64

Hortense_65
(helix-turn-helix DNA binding domain protein)

Hortense_66

Hortense_67
(holliday junction resolvase)

Hortense_68

Hortense_69

Hortense_70
(DnaB-like dsDNA helicase)

Hortense_71
(RusA-like resolvase)

Hortense_72

Hortense_73

Hortense_74

Hortense_75

Hortense_76

Hortense_77

Hortense_78

Hortense_79

Hortense_80
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMZ681515
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 7 X 10⁸
Date of SEA Lysate Titering Apr 6, 2017
Pitt Freezer Box# 55
Pitt Freezer Box Grid# G7
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload