Gordonia phage Vasanti
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Detailed Information for Phage Vasanti
Discovery Information
Isolation HostGordonia terrae 3612
Found ByHetvi Patel
Year Found2017
Location FoundPittsburgh, PA USA
Finding InstitutionUniversity of Pittsburgh
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?No
Isolation Temperature22°C
GPS Coordinates40.442667 N, 79.955293 W Map
Discovery NotesThe soil of my sample was loose and moist. The weather outside was breezy, cloudy, had light droplets of rain, and had a temperature of 21.7 degrees Celsius. Local vegetation included multicolored flowers within inches of the soil collection site.

My soil sample was stored in a dark, room temperature drawer. My soil sample was transported for 5 minutes and stored for 15 hours, 25 minutes.
Naming NotesI named this phage after my grandma. I chose this name because I am close to my grandma and there is no other phage on the database with this name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2018
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage1162
Genome length (bp)46463
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceTACCAGGGGGA
GC Content67.0%
Fasta file available?Yes: Download fasta file
Characterization
ClusterCZ
SubclusterCZ2
Cluster Life CycleTemperate
Other Cluster Members
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Has been Phamerated?Yes
Gene List

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Vasanti_1
(terminase, small subunit)

Vasanti_2
(terminase, large subunit)

Vasanti_3
(portal protein)

Vasanti_4
(capsid maturation protease)

Vasanti_5
(scaffolding protein)

Vasanti_6
(major capsid protein)

Vasanti_7

Vasanti_8
(head-to-tail connector complex protein)

Vasanti_9
(head-to-tail stopper)

Vasanti_10

Vasanti_11
(tail terminator)

Vasanti_12
(major tail protein)

Vasanti_13
(tail assembly chaperone)

Vasanti_14
(tail assembly chaperone)

Vasanti_15
(tape measure protein)

Vasanti_16
(minor tail protein)

Vasanti_17
(minor tail protein)

Vasanti_18
(lysin A)

Vasanti_19
(membrane protein)

Vasanti_20
(membrane protein)

Vasanti_21
(membrane protein)

Vasanti_22

Vasanti_23
(lysin B)

Vasanti_24
(minor tail protein)

Vasanti_25

Vasanti_26

Vasanti_27

Vasanti_28
(minor tail protein)

Vasanti_29
(phosphoribosyl transferase)

Vasanti_30
(DprA-like DNA processing chain A)

Vasanti_31
(helix-turn-helix DNA binding domain)

Vasanti_32

Vasanti_33

Vasanti_34

Vasanti_35

Vasanti_36

Vasanti_37
(integrase, (Y-int))

Vasanti_38

Vasanti_39
(peptidase)

Vasanti_40
(peptidase)

Vasanti_41
(immunity repressor)

Vasanti_42
(helix-turn-helix DNA binding domain)

Vasanti_43

Vasanti_44

Vasanti_45

Vasanti_46

Vasanti_47
(helix-turn-helix DNA binding domain)

Vasanti_48

Vasanti_49

Vasanti_50

Vasanti_51

Vasanti_52

Vasanti_53

Vasanti_54
(exonuclease)

Vasanti_55
(RecT-like ssDNA binding protein)

Vasanti_56

Vasanti_57
(chaperonin, DnaJ-like)

Vasanti_58

Vasanti_59
(DNA methylase)

Vasanti_60
(helix-turn-helix DNA binding domain)

Vasanti_61
(RNA polymerase sigma factor)

Vasanti_62
(DNA methylase)

Vasanti_63

Vasanti_64
(RNA polymerase sigma factor)

Vasanti_65

Vasanti_66

Vasanti_67
(RusA-like resolvase (endonuclease))

Vasanti_68
(helix-turn-helix DNA binding domain, MerR-like)

Vasanti_69

Vasanti_70

Vasanti_71

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionMK359313
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 58
Pitt Freezer Box Grid# B10
Available Files
Plaque PictureDownload
Restriction Digest PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload